Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 2.2e-125 452.2 215 100.0
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 1.7e-77 293.1 138 98.6
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 2.3e-74 282.7 148 91.2
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 6.8e-66 254.6 144 79.9
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 8.8e-66 254.2 146 79.5
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 9.8e-65 250.8 141 83.0
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.3e-64 250.4 139 81.3
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 1.3e-64 250.4 139 81.3
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 1.1e-63 247.3 141 77.3
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 1.8e-63 246.5 139 81.3
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 1.8e-63 246.5 146 75.3
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 1.2e-62 243.8 138 79.0
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 4.5e-62 241.9 139 77.0
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 1.3e-61 240.4 138 76.8
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 1.7e-61 240.0 144 75.7
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.7e-61 240.0 134 78.4
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.9e-61 239.2 141 78.7
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 6.6e-61 238.0 144 74.3
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 1.1e-60 237.3 139 77.0
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 1.1e-60 237.3 139 76.3
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 1.9e-60 236.5 144 73.6
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 1.9e-60 236.5 143 73.4
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 1.9e-60 236.5 159 69.2
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 1.6e-59 233.4 144 73.6
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 1.6e-59 233.4 144 73.6
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 1.6e-59 233.4 143 74.1
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 1.4e-58 230.3 151 70.9
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 1.4e-58 230.3 141 75.2
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 5.2e-58 228.4 151 68.9
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 5.2e-58 228.4 139 74.8
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 2.0e-57 226.5 141 73.8
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 2.0e-57 226.5 141 73.8
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 2.2e-56 223.0 144 70.1
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 4.9e-56 221.9 144 70.1
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 4.9e-56 221.9 139 69.8
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 8.3e-56 221.1 139 71.2
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 8.3e-56 221.1 139 71.2
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 1.1e-55 220.7 144 67.4
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 1.4e-55 220.3 139 69.1
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 1.8e-55 219.9 139 69.8
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 2.4e-55 219.5 139 69.1
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 9.2e-55 217.6 139 69.1
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 5.9e-54 214.9 145 67.6
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 3.0e-53 212.6 144 68.8
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 6.6e-53 211.5 141 71.6
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 6.6e-53 211.5 141 71.6
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 8.6e-53 211.1 142 66.2
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 1.5e-52 210.3 144 71.5
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 5.6e-52 208.4 139 68.3
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 4.7e-51 205.3 139 69.1
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 3.1e-50 202.6 109 85.3
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 3.1e-50 202.6 139 67.6
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 4.4e-49 198.7 114 79.8
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 2.2e-48 196.4 136 64.0
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.1e-47 194.1 114 78.9
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 1.4e-47 193.7 109 80.7
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 3.2e-47 192.6 114 75.4
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 4.1e-47 192.2 109 79.8
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 5.4e-47 191.8 147 62.6
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 5.4e-47 191.8 114 77.2
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 7.0e-47 191.4 114 77.2
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 7.0e-47 191.4 107 79.4
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 9.2e-47 191.0 113 78.8
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 1.6e-46 190.3 109 78.0
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 2.0e-46 189.9 114 78.1
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.0e-46 189.9 114 78.1
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 2.7e-46 189.5 114 76.3
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 3.5e-46 189.1 109 79.8
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 3.5e-46 189.1 108 77.8
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 3.5e-46 189.1 108 77.8
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 4.6e-46 188.7 109 77.1
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 4.6e-46 188.7 109 77.1
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 6.0e-46 188.3 114 75.4
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 6.0e-46 188.3 106 78.3
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 1.0e-45 187.6 109 75.2
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 1.3e-45 187.2 109 78.0
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.7e-45 186.8 107 76.6
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.3e-45 186.4 110 79.1
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 3.0e-45 186.0 114 76.3
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 3.9e-45 185.7 109 78.0
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 6.6e-45 184.9 138 63.0
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 6.6e-45 184.9 139 64.7
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 6.6e-45 184.9 109 76.1
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 8.6e-45 184.5 109 74.3
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 8.6e-45 184.5 108 77.8
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 1.1e-44 184.1 114 76.3
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 1.1e-44 184.1 114 77.2
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 1.5e-44 183.7 109 77.1
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 1.2e-43 180.6 139 59.7
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 3.6e-43 179.1 115 73.0
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 4.7e-43 178.7 112 70.5
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 6.2e-43 178.3 109 70.6
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 6.2e-43 178.3 106 76.4
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 8.1e-43 177.9 109 77.1
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 5.2e-42 175.3 114 71.9
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 1.5e-41 173.7 114 73.7
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 2.0e-41 173.3 139 57.6
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 7.5e-41 171.4 111 72.1
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 7.5e-41 171.4 114 70.2
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 2.2e-40 169.9 135 63.0
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 3.7e-40 169.1 139 56.8
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 4.9e-40 168.7 110 71.8
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 2.4e-39 166.4 119 66.4
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 1.1e-36 157.5 139 53.2
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 1.9e-36 156.8 139 53.2
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 1.9e-36 156.8 139 53.2
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 2.8e-35 152.9 139 54.0
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 1.8e-34 150.2 117 63.2
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 2.2e-32 143.3 113 60.2
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 1.9e-31 140.2 114 58.8
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 2.4e-31 139.8 180 40.0
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 1.6e-30 137.1 157 43.3
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 5.6e-28 128.6 116 55.2
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 3.1e-26 122.9 112 53.6
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 2.2e-24 116.7 174 37.9
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 2.7e-22 109.8 89 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 2.3e-21 106.7 138 42.0
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 2.1e-19 100.1 85 56.5
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 3.0e-13 79.7 142 33.1
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 5.6e-12 75.5 135 27.4
Lj1A234G35 Lonicera japonica HOM05D003901 ORTHO05D004511 8.1e-11 71.6 66 47.0
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 1.4e-10 70.9 139 34.5
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 1.5e-09 67.4 122 33.6
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 6.4e-08 62.0 122 39.3
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 6.4e-08 62.0 122 39.3
Nitab4.5_0000152g0140 Nicotiana tabacum HOM05D005961 ORTHO05D007391 1.9e-07 60.5 85 38.8
Nitab4.5_0000838g0220 Nicotiana tabacum HOM05D002634 ORTHO05D003100 2.4e-07 60.1 81 38.3
Nitab4.5_0001303g0010 Nicotiana tabacum HOM05D005961 ORTHO05D007391 5.5e-07 58.9 85 37.6
FAN27G3042 Fragaria x ananassa HOM05D002634 ORTHO05D003100 9.3e-07 58.2 81 34.6
Lj4A762T8 Lonicera japonica HOM05D002634 ORTHO05D003100 9.3e-07 58.2 81 34.6
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 9.3e-07 58.2 108 34.3
Solyc07g066060.3 Solanum lycopersicum HOM05D005961 ORTHO05D007391 9.3e-07 58.2 85 36.5
Sopen07g034240 Solanum pennellii HOM05D005961 ORTHO05D007391 9.3e-07 58.2 85 36.5
PGSC0003DMG400022149 Solanum tuberosum HOM05D005961 ORTHO05D007391 9.3e-07 58.2 85 36.5
AUR62027451 Chenopodium quinoa HOM05D005961 ORTHO05D007391 1.6e-06 57.4 85 37.6
AUR62031244 Chenopodium quinoa HOM05D005961 ORTHO05D007391 1.6e-06 57.4 85 35.3
Cc05_g15600 Coffea canephora HOM05D005961 ORTHO05D007391 1.6e-06 57.4 85 37.6
Sc20g0000030 Simmondsia chinensis HOM05D005961 ORTHO05D007391 1.6e-06 57.4 85 36.5
CiPaw.11G209700 Carya illinoinensis HOM05D005961 ORTHO05D007391 2.1e-06 57.0 85 36.5
ECA246G2546 Erigeron canadensis HOM05D005961 ORTHO05D007391 2.1e-06 57.0 94 34.0
SGA_v2.0_scaffold92G28182 Striga asiatica HOM05D005961 ORTHO05D007391 2.1e-06 57.0 85 37.6
Eucgr.F01999 Eucalyptus grandis HOM05D005961 ORTHO05D007391 2.7e-06 56.6 85 36.5
Glyma.17G165900 Glycine max HOM05D002634 ORTHO05D003100 2.7e-06 56.6 88 35.2
Lj6g0009597 Lotus japonicus HOM05D005961 ORTHO05D007391 2.7e-06 56.6 85 38.8
Nn1g08308 Nelumbo nucifera HOM05D005961 ORTHO05D007391 2.7e-06 56.6 85 35.3
Oeu026621.1 Olea europaea HOM05D005961 ORTHO05D007391 2.7e-06 56.6 85 37.6
Phvul.006G061900 Phaseolus vulgaris HOM05D005961 ORTHO05D007391 2.7e-06 56.6 85 38.8
Potri.001G470900 Populus trichocarpa HOM05D005961 ORTHO05D007391 2.7e-06 56.6 85 35.3
Rhsim04G0008500 Rhododendron simsii HOM05D005961 ORTHO05D007391 2.7e-06 56.6 85 36.5
Sabra16G0319500 Salix brachista HOM05D005961 ORTHO05D007391 2.7e-06 56.6 85 35.3
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.7e-06 56.6 142 23.9
vmacro09602 Vaccinium macrocarpon HOM05D005961 ORTHO05D007391 2.7e-06 56.6 85 36.5
GSVIVG01014763001 Vitis vinifera HOM05D005961 ORTHO05D007391 2.7e-06 56.6 85 37.6
CARHR269490 Cardamine hirsuta HOM05D005961 ORTHO05D007391 3.5e-06 56.2 158 23.4
Dinv40902 Davidia involucrata HOM05D005961 ORTHO05D007391 3.5e-06 56.2 85 37.6
Thhalv10014152m.g Eutrema salsugineum HOM05D005961 ORTHO05D007391 3.5e-06 56.2 85 32.9
Glyma.05G100500 Glycine max HOM05D002634 ORTHO05D003100 3.5e-06 56.2 88 35.2
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 3.5e-06 56.2 85 37.6
Actinidia24202 Actinidia chinensis HOM05D003901 ORTHO05D004511 4.6e-06 55.8 56 44.6
MSTRG.14516 Avicennia marina HOM05D005961 ORTHO05D007391 4.6e-06 55.8 85 37.6
CANSAT11G0752 Cannabis sativa HOM05D005961 ORTHO05D007391 4.6e-06 55.8 85 35.3
Glyma.17G165702 Glycine max HOM05D002634 ORTHO05D003100 4.6e-06 55.8 88 34.1
TWI39G0064 Tripterygium wilfordii HOM05D005961 ORTHO05D007391 4.6e-06 55.8 85 35.3
arahy.Tifrunner.gnm1.ann1.3II979 Arachis hypogaea HOM05D005961 ORTHO05D007391 6.0e-06 55.5 85 37.6
arahy.Tifrunner.gnm1.ann1.6L2P9T Arachis hypogaea HOM05D005961 ORTHO05D007391 6.0e-06 55.5 85 37.6
Ca_14870_v3 Cicer arietinum L. HOM05D005961 ORTHO05D007391 6.0e-06 55.5 85 37.6
Ciclev10008971m.g Citrus clementina HOM05D005961 ORTHO05D007391 6.0e-06 55.5 85 36.5
FvH4_3g41780 Fragaria vesca HOM05D005961 ORTHO05D007391 6.0e-06 55.5 86 34.9
Glyma.08G336200 Glycine max HOM05D005961 ORTHO05D007391 6.0e-06 55.5 85 37.6
Glyma.18G071300 Glycine max HOM05D005961 ORTHO05D007391 6.0e-06 55.5 85 37.6
MD11G1042100 Malus domestica HOM05D005961 ORTHO05D007391 6.0e-06 55.5 85 36.5
Prupe.6G033200 Prunus persica HOM05D005961 ORTHO05D007391 6.0e-06 55.5 85 36.5
unitig_0.g980 Utricularia gibba HOM05D005961 ORTHO05D007391 6.0e-06 55.5 85 32.9
VMungo0540G0750 Vigna mungo HOM05D005961 ORTHO05D007391 6.0e-06 55.5 85 37.6
ATR0751G034 Amborella trichopoda HOM05D005961 ORTHO05D007391 7.9e-06 55.1 85 35.3
Carub.0008s1645 Capsella rubella HOM05D005961 ORTHO05D007391 7.9e-06 55.1 158 23.4
Cpa.g.sc12.78 Carica papaya HOM05D005961 ORTHO05D007391 7.9e-06 55.1 82 36.6
CDE03G0125 Ceratophyllum demersum HOM05D005961 ORTHO05D007391 7.9e-06 55.1 85 32.9
COL.COLO4_18482 Corchorus olitorius HOM05D005961 ORTHO05D007391 7.9e-06 55.1 85 35.3
FAN16G0538 Fragaria x ananassa HOM05D005961 ORTHO05D007391 7.9e-06 55.1 86 34.9
Gohir.A04G001700 Gossypium hirsutum HOM05D005961 ORTHO05D007391 7.9e-06 55.1 85 35.3
Gorai.009G454300 Gossypium raimondii HOM05D005961 ORTHO05D007391 7.9e-06 55.1 85 35.3
PSO541G1089 Papaver somniferum HOM05D005961 ORTHO05D007391 7.9e-06 55.1 85 36.5
PSO675G5428 Papaver somniferum HOM05D005961 ORTHO05D007391 7.9e-06 55.1 85 36.5
Peaxi162Scf00232g00531 Petunia axillaris HOM05D005961 ORTHO05D007391 7.9e-06 55.1 85 35.3
Thecc.07G002900 Theobroma cacao HOM05D005961 ORTHO05D007391 7.9e-06 55.1 85 35.3


User provided reference genes

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