Gene: Sopen11g001760

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g001760
  • Transcript Identifier Sopen11g001760.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 687899-693814 : negative

Gene Family Information

  • ID HOM05D005401
  • #Genes/#Species 141/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g001760.1

Descriptions

  • Description Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. | FASCIATA 2 (FAS2) | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , WD40 repeat-like-containing domain , WD40 repeat, conserved site , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: homolog of histone chaperone HIRA
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006335
IEA
InterProDNA replication-dependent nucleosome assembly
GO:0031507
ISO
PLAZA Integrative Orthologyheterochromatin assembly AT5G64630
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT5G64630
GO:0000724
ISO
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination AT5G64630
GO:0006310
ISO
PLAZA Integrative OrthologyDNA recombination AT5G64630
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT5G64630
GO:0009933
ISO
PLAZA Integrative Orthologymeristem structural organization AT5G64630
GO:0006334
ISO
PLAZA Integrative Orthologynucleosome assembly AT5G64630
GO:0010026
ISO
PLAZA Integrative Orthologytrichome differentiation AT5G64630
GO:0016049
ISO
PLAZA Integrative Orthologycell growth AT5G64630

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0033186
ISO
PLAZA Integrative OrthologyCAF-1 complex AT5G64630

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR001680 WD40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR045145 Chromatin assembly factor 1 subunit Cac2/CHAF1B/FAS2
Mapman id Description
12.2.1.2 Chromatin organisation.histone chaperone activities.CAF1 histone chaperone complex.component CAF1b/FAS2