Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g34020 Coffea canephora HOM05D001670 ORTHO05D018202 1.9e-25 118.2 55 100.0
Cc04_g13500 Coffea canephora HOM05D001670 ORTHO05D018202 3.1e-23 110.9 55 92.7
Cc01_g04040 Coffea canephora HOM05D000096 ORTHO05D000045 1.2e-22 109.0 55 90.9
Cc05_g01420 Coffea canephora HOM05D000334 ORTHO05D000200 5.8e-22 106.7 54 88.9
Cc10_g13560 Coffea canephora HOM05D001670 ORTHO05D018202 5.8e-22 106.7 55 89.1
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 1.3e-08 62.4 30 90.0
Actinidia12672 Actinidia chinensis HOM05D001670 ORTHO05D018202 1.6e-08 62.0 30 90.0
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
Hma1.2p1_0341F.1_g130260 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 1.6e-08 62.0 30 90.0
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 2.2e-08 61.6 30 90.0
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 2.2e-08 61.6 30 90.0
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 2.2e-08 61.6 30 90.0
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 2.2e-08 61.6 30 90.0
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 2.2e-08 61.6 30 90.0
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 2.2e-08 61.6 30 90.0
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 3.7e-08 60.8 30 86.7
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 3.7e-08 60.8 30 86.7
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 3.7e-08 60.8 30 86.7
Oeu064576.1 Olea europaea HOM05D001670 ORTHO05D002980 3.7e-08 60.8 30 86.7
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 3.7e-08 60.8 30 86.7
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 4.8e-08 60.5 30 86.7
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 6.3e-08 60.1 30 86.7
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 6.3e-08 60.1 30 86.7
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 6.3e-08 60.1 30 86.7
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 8.2e-08 59.7 30 86.7
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 8.2e-08 59.7 30 86.7
Actinidia02758 Actinidia chinensis HOM05D001670 ORTHO05D018202 1.1e-07 59.3 30 83.3
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 1.1e-07 59.3 30 86.7
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 1.1e-07 59.3 30 83.3
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 1.1e-07 59.3 30 86.7
GSVIVG01000874001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.1e-07 59.3 30 86.7
GSVIVG01000883001 Vitis vinifera HOM05D001670 ORTHO05D018202 1.1e-07 59.3 30 86.7
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 1.4e-07 58.9 30 83.3
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 1.8e-07 58.5 30 83.3
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 2.4e-07 58.2 30 83.3
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 2.4e-07 58.2 30 83.3
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 2.4e-07 58.2 30 83.3
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 3.1e-07 57.8 30 83.3
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 3.1e-07 57.8 30 83.3
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 3.1e-07 57.8 30 83.3
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 3.1e-07 57.8 30 83.3
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 4.1e-07 57.4 30 80.0
Haze_02720 Corylus avellana HOM05D001670 ORTHO05D002980 4.1e-07 57.4 30 80.0
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 4.1e-07 57.4 30 80.0
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 4.1e-07 57.4 30 80.0
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 4.1e-07 57.4 30 80.0
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 4.1e-07 57.4 30 80.0
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 5.3e-07 57.0 30 80.0
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 5.3e-07 57.0 30 83.3
Cpa.g.sc587.1 Carica papaya HOM05D001670 ORTHO05D002980 5.3e-07 57.0 30 80.0
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 5.3e-07 57.0 30 80.0
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 5.3e-07 57.0 30 76.7
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 5.3e-07 57.0 30 80.0
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 6.9e-07 56.6 30 80.0
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 6.9e-07 56.6 30 80.0
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 6.9e-07 56.6 30 80.0
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 6.9e-07 56.6 30 80.0
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 9.0e-07 56.2 30 80.0
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 9.0e-07 56.2 30 76.7
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 1.5e-06 55.5 30 80.0
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.5e-06 55.5 30 80.0
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 2.0e-06 55.1 30 76.7
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 2.0e-06 55.1 30 76.7
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 2.0e-06 55.1 30 76.7
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 80.0
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 76.7
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 76.7
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 76.7
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 76.7
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 76.7
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 76.7
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 80.0
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 76.7
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 80.0
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 80.0
Psat4g209440 Pisum sativum HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 80.0
PRCOL_00002164 Prasinoderma coloniale HOM05D001670 ORTHO05D002980 2.6e-06 54.7 47 55.3
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 76.7
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 2.6e-06 54.7 30 80.0
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 3.4e-06 54.3 30 76.7
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 3.4e-06 54.3 30 76.7
A09p69250 Brassica napus HOM05D001670 ORTHO05D002980 3.4e-06 54.3 30 76.7
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 3.4e-06 54.3 30 76.7
C08p54070 Brassica napus HOM05D001670 ORTHO05D002980 3.4e-06 54.3 30 76.7
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 3.4e-06 54.3 30 76.7
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 3.4e-06 54.3 30 76.7
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 3.4e-06 54.3 30 76.7
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 4.5e-06 53.9 30 76.7
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 4.5e-06 53.9 30 76.7
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 5.9e-06 53.5 30 76.7
Cre14.g632950 Chlamydomonas reinhardtii HOM05D001670 ORTHO05D002980 5.9e-06 53.5 30 76.7
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 7.7e-06 53.1 30 76.7
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 7.7e-06 53.1 30 76.7
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 7.7e-06 53.1 30 76.7
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 7.7e-06 53.1 30 76.7
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 7.7e-06 53.1 30 76.7


User provided reference genes

Program Settings