Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g33690 Coffea canephora HOM05D000104 ORTHO05D005604 1.1e-51 206.5 107 100.0
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 1.5e-45 186.0 96 99.0
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 3.0e-38 161.8 96 85.4
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 8.6e-38 160.2 96 84.4
Nitab4.5_0006542g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005604 1.9e-37 159.1 94 86.2
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 2.5e-37 158.7 96 84.4
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 5.6e-37 157.5 96 83.3
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 5.6e-37 157.5 96 83.3
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 1.2e-36 156.4 96 83.3
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 8.1e-36 153.7 99 77.8
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 4.0e-35 151.4 96 80.2
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 6.9e-35 150.6 96 80.2
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 1.5e-34 149.4 104 76.0
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 1.5e-34 149.4 99 76.8
Lj1A357G13 Lonicera japonica HOM05D000104 ORTHO05D005604 1.5e-34 149.4 96 80.2
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 5.8e-34 147.5 91 83.5
Dinv36280 Davidia involucrata HOM05D000104 ORTHO05D005604 5.8e-34 147.5 96 79.2
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 5.8e-34 147.5 95 83.2
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 9.9e-34 146.7 94 78.7
unitig_32.g11765 Utricularia gibba HOM05D000186 ORTHO05D002329 9.9e-34 146.7 96 78.1
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 1.3e-33 146.4 96 78.1
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 1.7e-33 146.0 96 78.1
ECA233G1169 Erigeron canadensis HOM05D000104 ORTHO05D005604 2.2e-33 145.6 94 78.7
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 2.2e-33 145.6 91 83.5
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 2.2e-33 145.6 91 81.3
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 2.9e-33 145.2 99 73.7
ClCG05G005740 Citrullus lanatus HOM05D000104 ORTHO05D005604 4.9e-33 144.4 99 74.7
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 4.9e-33 144.4 91 82.4
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 4.9e-33 144.4 96 82.3
EL10Ac3g06521 Beta vulgaris HOM05D000104 ORTHO05D005604 6.4e-33 144.1 104 72.1
CsaV3_3G014070 Cucumis sativus L. HOM05D000104 ORTHO05D005604 6.4e-33 144.1 99 75.8
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 6.4e-33 144.1 99 75.8
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 8.4e-33 143.7 93 80.6
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 1.1e-32 143.3 94 77.7
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.1e-32 143.3 93 80.6
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.1e-32 143.3 93 80.6
Glyma.07G252100 Glycine max HOM05D000104 ORTHO05D005604 1.1e-32 143.3 91 82.4
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 1.1e-32 143.3 91 81.3
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 1.1e-32 143.3 99 74.7
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 1.4e-32 142.9 91 80.2
AUR62042660 Chenopodium quinoa HOM05D000104 ORTHO05D005604 1.9e-32 142.5 93 79.6
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 3.2e-32 141.7 91 79.1
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 3.2e-32 141.7 91 82.4
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 3.2e-32 141.7 91 80.2
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 3.2e-32 141.7 88 84.1
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 4.2e-32 141.4 101 75.2
Actinidia16312 Actinidia chinensis HOM05D000104 ORTHO05D005604 5.4e-32 141.0 96 77.1
BcaB01g03644 Brassica carinata HOM05D000104 ORTHO05D005604 5.4e-32 141.0 95 77.9
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 5.4e-32 141.0 101 75.2
CANSAT78G1941 Cannabis sativa HOM05D000104 ORTHO05D005604 7.1e-32 140.6 96 75.0
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 7.1e-32 140.6 91 79.1
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 1.2e-31 139.8 89 84.3
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 1.6e-31 139.4 91 76.9
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 1.6e-31 139.4 96 76.0
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 1.6e-31 139.4 96 76.0
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 1.6e-31 139.4 96 76.0
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 1.6e-31 139.4 96 76.0
HanXRQChr17g0554821 Helianthus annuus HOM05D000104 ORTHO05D005604 1.6e-31 139.4 88 79.5
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 2.7e-31 138.7 94 74.5
Ah.13g074440 Amaranthus hybridus HOM05D000404 ORTHO05D005791 3.5e-31 138.3 95 73.7
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 4.6e-31 137.9 91 79.1
CiPaw.02G087300 Carya illinoinensis HOM05D000104 ORTHO05D005604 6.0e-31 137.5 96 76.0
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 6.0e-31 137.5 93 78.5
COL.COLO4_25219 Corchorus olitorius HOM05D000104 ORTHO05D005604 7.8e-31 137.1 91 79.1
Cfa015504 Carpinus fangiana HOM05D000104 ORTHO05D005604 1.0e-30 136.7 101 72.3
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 1.3e-30 136.3 91 78.0
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 1.3e-30 136.3 93 75.3
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 2.3e-30 135.6 90 78.9
TAR365G0556 Trochodendron aralioides HOM05D000104 ORTHO05D005604 2.3e-30 135.6 98 73.5
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 6.6e-30 134.0 98 74.5
arahy.Tifrunner.gnm1.ann1.Z03QFY Arachis hypogaea HOM05D000104 ORTHO05D005604 6.6e-30 134.0 98 74.5
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 6.6e-30 134.0 94 75.5
MBI19_g34717_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 8.7e-30 133.7 89 75.3
Nitab4.5_0002766g0090 Nicotiana tabacum HOM05D000455 ORTHO05D010375 1.1e-29 133.3 95 69.5
Gohir.A09G233050 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.5e-29 132.9 97 72.2
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.9e-29 132.5 91 78.0
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 1.9e-29 132.5 91 78.0
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 2.5e-29 132.1 91 74.7
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 2.5e-29 132.1 91 74.7
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 2.5e-29 132.1 94 74.5
Nitab4.5_0004806g0040 Nicotiana tabacum HOM05D000455 ORTHO05D000434 3.3e-29 131.7 96 67.7
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 3.3e-29 131.7 91 74.7
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 7.3e-29 130.6 88 72.7
arahy.Tifrunner.gnm1.ann1.N8S0IJ Arachis hypogaea HOM05D000104 ORTHO05D005604 1.3e-28 129.8 98 72.4
Os06g0255200 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D005604 1.3e-28 129.8 91 71.4
arahy.Tifrunner.gnm1.ann1.Q30CKZ Arachis hypogaea HOM05D000104 ORTHO05D005604 2.8e-28 128.6 98 71.4
ATR1101G061 Amborella trichopoda HOM05D000104 ORTHO05D005604 3.6e-28 128.3 90 73.3
Haze_01047 Corylus avellana HOM05D000104 ORTHO05D005604 4.8e-28 127.9 111 65.8
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.1e-27 126.7 91 74.7
FAN07G2961 Fragaria x ananassa HOM05D000104 ORTHO05D005604 2.4e-27 125.6 129 58.1
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 1.2e-26 123.2 98 65.3
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 1.2e-26 123.2 98 65.3
HPP92_007983 Vanilla planifolia HOM05D002012 ORTHO05D001992 1.2e-26 123.2 89 71.9
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 2.0e-26 122.5 87 73.6
TAR362G0998 Trochodendron aralioides HOM05D000104 ORTHO05D005604 2.6e-26 122.1 93 67.7
CDE05G2634 Ceratophyllum demersum HOM05D000104 ORTHO05D005604 9.9e-26 120.2 88 70.5
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 3.2e-24 115.2 142 50.7
Ah.04g153970 Amaranthus hybridus HOM05D000104 ORTHO05D005604 2.1e-23 112.5 137 49.6
BcaB02g10070 Brassica carinata HOM05D000484 ORTHO05D005604 6.0e-23 110.9 64 87.5
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 7.9e-23 110.5 91 67.0
arahy.Tifrunner.gnm1.ann1.Q10S7I Arachis hypogaea HOM05D000104 ORTHO05D005604 1.8e-22 109.4 91 65.9
FAN12G0301 Fragaria x ananassa HOM05D000104 ORTHO05D005604 2.4e-19 99.0 55 90.9
TPR.G14955 Trifolium pratense HOM05D029028 ORTHO05D030699 6.9e-19 97.4 93 59.1
arahy.Tifrunner.gnm1.ann1.E69ZFU Arachis hypogaea HOM05D000104 ORTHO05D005604 2.0e-18 95.9 57 84.2
MD16G1176400 Malus domestica HOM05D000104 ORTHO05D005604 1.9e-16 89.4 70 68.6
MD13G1174700 Malus domestica HOM05D000104 ORTHO05D005604 1.6e-15 86.3 69 66.7
arahy.Tifrunner.gnm1.ann1.0XZV5D Arachis hypogaea HOM05D000846 ORTHO05D001340 3.5e-15 85.1 52 84.6
AagrBONN_evm.TU.Sc2ySwM_368.1449 Anthoceros agrestis HOM05D000104 ORTHO05D005604 7.9e-15 84.0 95 53.7
Mapoly0171s0025 Marchantia polymorpha HOM05D000104 ORTHO05D005604 1.3e-14 83.2 92 50.0
Pp3c14_90 Physcomitrium patens HOM05D000104 ORTHO05D005604 5.6e-13 77.8 91 41.8
SHI00293 Sapria himalayana HOM05D000691 ORTHO05D000378 7.4e-13 77.4 90 51.1
vmacro04191 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 5.8e-10 67.8 171 33.9
TAR365G0890 Trochodendron aralioides HOM05D000104 ORTHO05D005604 3.2e-08 62.0 59 54.2
MBI13_g06829_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 4.6e-07 58.2 35 80.0
arahy.Tifrunner.gnm1.ann1.TG6BII Arachis hypogaea HOM05D000181 ORTHO05D014369 3.9e-06 55.1 35 77.1
AUR62040388 Chenopodium quinoa HOM05D000104 ORTHO05D005604 8.7e-06 53.9 42 64.3


User provided reference genes

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