Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g28580 Coffea canephora HOM05D003708 ORTHO05D004452 1.8e-87 325.9 162 100.0
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 7.1e-60 234.2 166 73.5
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 1.6e-59 233.0 166 72.3
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 2.1e-59 232.6 161 75.8
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 2.7e-59 232.3 161 75.8
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 4.6e-59 231.5 161 75.8
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 1.8e-58 229.6 161 75.2
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 8.7e-58 227.3 162 72.8
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 1.1e-55 220.3 158 73.4
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 1.8e-55 219.5 159 69.8
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 1.2e-54 216.9 166 68.7
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 1.2e-54 216.9 166 67.5
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 3.4e-54 215.3 159 69.2
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 3.4e-54 215.3 159 69.2
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.5e-54 214.9 159 69.2
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 7.6e-54 214.2 158 69.6
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 1.0e-53 213.8 164 67.7
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 1.3e-53 213.4 163 69.9
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.7e-53 213.0 167 69.5
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 2.2e-53 212.6 164 67.1
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.9e-53 212.2 159 68.6
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 2.9e-53 212.2 167 67.7
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 2.9e-53 212.2 165 66.7
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 3.8e-53 211.8 161 68.3
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 3.8e-53 211.8 162 71.0
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 5.0e-53 211.5 161 64.6
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 1.9e-52 209.5 166 67.5
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 2.5e-52 209.1 166 67.5
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 2.5e-52 209.1 127 78.7
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 4.2e-52 208.4 146 74.0
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 4.2e-52 208.4 167 65.9
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 5.5e-52 208.0 161 68.9
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 5.5e-52 208.0 161 65.8
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 7.2e-52 207.6 161 68.9
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 7.2e-52 207.6 161 68.9
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 2.1e-51 206.1 145 67.6
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 2.1e-51 206.1 169 66.9
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 2.1e-51 206.1 194 60.3
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 3.5e-51 205.3 169 66.9
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 3.5e-51 205.3 165 65.5
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 6.1e-51 204.5 165 64.8
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 6.1e-51 204.5 159 67.3
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 7.9e-51 204.1 165 65.5
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 7.9e-51 204.1 155 69.0
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 1.0e-50 203.8 160 67.5
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 1.0e-50 203.8 160 65.0
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 1.3e-50 203.4 166 64.5
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 1.3e-50 203.4 166 65.7
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 1.8e-50 203.0 153 68.0
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.8e-50 203.0 166 64.5
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 2.3e-50 202.6 161 67.1
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 2.3e-50 202.6 161 66.5
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 3.9e-50 201.8 166 62.7
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 3.9e-50 201.8 169 65.7
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 3.9e-50 201.8 164 64.6
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 6.7e-50 201.1 168 66.1
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 6.7e-50 201.1 170 65.9
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 1.1e-49 200.3 166 66.9
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 1.1e-49 200.3 169 64.5
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 1.1e-49 200.3 163 65.6
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 1.5e-49 199.9 161 65.8
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.5e-49 199.9 145 65.5
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 1.5e-49 199.9 168 64.3
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.5e-49 199.9 171 63.2
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 1.9e-49 199.5 153 67.3
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.9e-49 199.5 167 65.9
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 2.5e-49 199.1 165 67.9
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 2.5e-49 199.1 161 65.2
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 4.3e-49 198.4 150 66.0
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 5.7e-49 198.0 166 62.7
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 5.7e-49 198.0 145 69.0
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 7.4e-49 197.6 169 61.5
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 9.7e-49 197.2 166 62.0
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 1.3e-48 196.8 168 62.5
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 1.6e-48 196.4 169 62.7
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 2.2e-48 196.1 174 62.6
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.8e-48 195.7 155 65.2
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 3.7e-48 195.3 167 62.9
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 3.7e-48 195.3 126 72.2
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 4.8e-48 194.9 163 63.8
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 4.8e-48 194.9 161 65.8
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 6.3e-48 194.5 167 64.7
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 6.3e-48 194.5 159 62.9
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 6.3e-48 194.5 160 63.1
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 8.2e-48 194.1 135 72.6
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 8.2e-48 194.1 174 60.9
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 8.2e-48 194.1 166 63.3
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 1.1e-47 193.7 174 62.1
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 1.8e-47 193.0 164 61.0
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 1.8e-47 193.0 165 64.2
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.1e-47 192.2 148 68.2
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 3.1e-47 192.2 166 62.7
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 3.1e-47 192.2 161 64.0
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 4.1e-47 191.8 172 63.4
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 5.3e-47 191.4 170 62.9
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 5.3e-47 191.4 156 65.4
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 6.9e-47 191.0 163 63.8
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 9.0e-47 190.7 135 71.1
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 9.0e-47 190.7 164 60.4
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 1.2e-46 190.3 125 72.8
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 1.5e-46 189.9 165 62.4
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 2.0e-46 189.5 172 60.5
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 2.0e-46 189.5 172 60.5
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 2.0e-46 189.5 125 72.8
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 2.6e-46 189.1 138 67.4
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 2.6e-46 189.1 169 61.5
TPR.G8954 Trifolium pratense HOM05D003708 ORTHO05D004452 4.5e-46 188.3 167 62.9
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 5.9e-46 188.0 164 64.0
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 7.7e-46 187.6 169 60.9
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 7.7e-46 187.6 137 70.1
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 7.7e-46 187.6 165 59.4
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 1.0e-45 187.2 174 63.8
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 2.2e-45 186.0 173 60.1
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 2.2e-45 186.0 141 67.4
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 2.9e-45 185.7 165 58.8
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 5.0e-45 184.9 137 66.4
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 6.5e-45 184.5 166 61.4
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 1.1e-44 183.7 139 68.3
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 4.2e-44 181.8 129 68.2
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 5.5e-44 181.4 173 59.5
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 7.2e-44 181.0 171 59.6
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 1.6e-43 179.9 168 56.5
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 1.8e-42 176.4 174 56.9
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 9.7e-41 170.6 137 65.0
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 1.4e-39 166.8 155 57.4
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 2.0e-38 162.9 78 100.0
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 2.6e-38 162.5 163 54.6
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 1.0e-37 160.6 157 54.1
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 1.1e-36 157.1 100 71.0
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 4.2e-36 155.2 145 57.2
SEGI_18999 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.2e-36 155.2 161 52.8
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 2.7e-35 152.5 100 69.0
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 3.6e-35 152.1 113 65.5
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 7.9e-35 151.0 158 52.5
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.3e-34 149.4 161 52.8
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 7.4e-33 144.4 78 88.5
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 8.2e-32 141.0 149 56.4
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 2.4e-31 139.4 78 84.6
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 7.0e-31 137.9 100 66.0
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 7.0e-31 137.9 100 66.0
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.0e-29 134.0 100 65.0
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.7e-29 133.3 75 86.7
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 2.2e-29 132.9 75 85.3
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 2.7e-27 125.9 115 60.0
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.0e-26 124.0 145 52.4
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 3.0e-26 122.5 115 57.4
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 3.7e-24 115.5 84 69.0
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 8.2e-24 114.4 97 54.6
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 2.7e-22 109.4 130 48.5
BcaC04g19188 Brassica carinata HOM05D003708 ORTHO05D004452 7.2e-20 101.3 116 48.3
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 4.1e-15 85.5 66 63.6
BcaB01g05444 Brassica carinata HOM05D003708 ORTHO05D004452 2.0e-09 66.6 116 40.5
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 5.7e-09 65.1 49 61.2
Medtr5g022680 Medicago truncatula HOM05D003708 ORTHO05D004452 4.9e-08 62.0 52 50.0


User provided reference genes

Program Settings