Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 7.5e-64 246.9 114 100.0
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 2.6e-56 221.9 112 92.0
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 2.8e-34 148.7 81 88.9
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.3e-31 139.8 80 83.8
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 3.8e-31 138.3 81 82.7
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 4.9e-31 137.9 81 79.0
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 6.4e-31 137.5 81 80.2
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 6.4e-31 137.5 81 79.0
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 8.4e-31 137.1 81 79.0
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 1.9e-30 136.0 81 80.2
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.9e-30 136.0 81 80.2
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 3.2e-30 135.2 81 79.0
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 3.2e-30 135.2 80 81.2
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.1e-30 134.8 81 79.0
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.1e-30 134.8 81 79.0
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 4.1e-30 134.8 80 80.0
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 5.4e-30 134.4 81 81.5
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 5.4e-30 134.4 81 81.5
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.4e-30 134.4 81 77.8
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 5.4e-30 134.4 68 88.2
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 7.1e-30 134.0 81 80.2
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 7.1e-30 134.0 81 80.2
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 9.2e-30 133.7 81 76.5
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 9.2e-30 133.7 81 77.8
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 9.2e-30 133.7 81 75.3
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 9.2e-30 133.7 81 75.3
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 9.2e-30 133.7 81 75.3
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 9.2e-30 133.7 81 77.8
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 9.2e-30 133.7 81 80.2
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.2e-29 133.3 81 75.3
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.2e-29 133.3 81 79.0
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.2e-29 133.3 81 77.8
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.2e-29 133.3 80 78.8
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.2e-29 133.3 80 78.8
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.6e-29 132.9 81 76.5
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 2.1e-29 132.5 81 77.8
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 2.1e-29 132.5 68 86.8
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.1e-29 132.5 81 79.0
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 2.7e-29 132.1 81 79.0
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 2.7e-29 132.1 68 91.2
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 2.7e-29 132.1 80 77.5
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 2.7e-29 132.1 81 76.5
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 3.5e-29 131.7 81 77.8
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.5e-29 131.7 80 77.5
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 3.5e-29 131.7 81 79.0
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 3.5e-29 131.7 68 91.2
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.5e-29 131.7 82 75.6
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 4.6e-29 131.3 81 75.3
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 4.6e-29 131.3 81 75.3
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 4.6e-29 131.3 81 75.3
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 6.0e-29 131.0 68 86.8
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 6.0e-29 131.0 80 80.0
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 6.0e-29 131.0 69 87.0
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 6.0e-29 131.0 81 77.8
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 6.0e-29 131.0 67 88.1
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 6.0e-29 131.0 67 88.1
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 6.0e-29 131.0 80 80.0
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 7.8e-29 130.6 68 86.8
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 7.8e-29 130.6 67 88.1
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.0e-28 130.2 81 75.3
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.0e-28 130.2 67 86.6
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.0e-28 130.2 81 77.8
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.3e-28 129.8 69 84.1
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.3e-28 129.8 81 74.1
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.3e-28 129.8 80 77.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.7e-28 129.4 80 76.2
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.7e-28 129.4 81 77.8
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 2.3e-28 129.0 68 83.8
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 2.3e-28 129.0 67 86.6
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 3.9e-28 128.3 69 82.6
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.1e-28 127.9 81 75.3
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 5.1e-28 127.9 81 74.1
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 5.1e-28 127.9 81 75.3
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 1.1e-27 126.7 69 81.2
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.1e-27 126.7 81 74.1
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.5e-27 126.3 64 90.6
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.5e-27 126.3 81 75.3
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.9e-27 125.9 81 75.3
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.9e-27 125.9 81 71.6
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.9e-27 125.9 81 71.6
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.9e-27 125.9 81 71.6
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 2.5e-27 125.6 81 75.3
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 2.5e-27 125.6 80 70.0
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.5e-27 125.6 68 82.4
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 3.3e-27 125.2 80 73.8
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 5.6e-27 124.4 80 73.8
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 9.6e-27 123.6 68 80.9
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.2e-26 123.2 81 71.6
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 1.6e-26 122.9 69 76.8
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 4.7e-26 121.3 84 71.4
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 8.1e-26 120.6 81 69.1
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.1e-25 120.2 81 71.6
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.1e-25 120.2 81 71.6
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.4e-25 119.8 68 77.9
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.4e-25 119.0 80 70.0
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 3.1e-25 118.6 81 70.4
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.5e-24 116.3 114 55.3
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.0e-24 115.9 81 69.1
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 5.8e-24 114.4 68 77.9
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 9.9e-24 113.6 81 65.4
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 9.9e-24 113.6 81 69.1
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 4.9e-23 111.3 68 75.0
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 2.4e-22 109.0 124 51.6
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.2e-22 108.6 81 63.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 3.2e-22 108.6 81 64.2
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 3.2e-22 108.6 81 64.2
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 3.2e-22 108.6 81 64.2
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 5.4e-22 107.8 52 96.2
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 7.1e-22 107.5 68 72.1
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.2e-21 106.7 80 63.8
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 2.7e-21 105.5 80 63.8
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 2.7e-21 105.5 81 64.2
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 6.6e-20 100.9 81 58.0
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.1e-19 100.1 73 64.4
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 5.6e-19 97.8 82 56.1
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 5.6e-19 97.8 51 86.3
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 1.3e-18 96.7 81 58.0
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 6.2e-18 94.4 80 56.2
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.5e-16 89.7 79 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 4.9e-15 84.7 67 58.2
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 7.1e-14 80.9 82 56.1
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 7.9e-13 77.4 65 50.8
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 5.6e-11 71.2 36 91.7
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 3.6e-10 68.6 74 43.2
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.8e-09 66.2 32 90.6
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.3e-09 64.7 32 84.4
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 9.0e-09 63.9 36 80.6
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.8e-08 61.2 36 69.4
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 9.9e-08 60.5 33 75.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.1e-06 57.0 49 55.1
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.1e-06 57.0 30 83.3


User provided reference genes

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