Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.9e-71 272.3 127 100.0
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 8.4e-56 220.3 112 92.0
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 4.9e-32 141.4 89 76.4
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 2.7e-30 135.6 93 68.8
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 7.9e-30 134.0 86 74.4
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 6.7e-29 131.0 89 71.9
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 6.7e-29 131.0 89 67.4
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 1.1e-28 130.2 89 67.4
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 1.1e-28 130.2 92 68.5
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.1e-28 130.2 89 67.4
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.1e-28 130.2 113 57.5
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 1.1e-28 130.2 89 69.7
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.5e-28 129.8 90 71.1
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.5e-28 129.8 90 71.1
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.5e-28 129.8 89 68.5
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.9e-28 129.4 89 69.7
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 2.5e-28 129.0 89 68.5
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 3.3e-28 128.6 89 68.5
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 4.3e-28 128.3 89 67.4
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 7.4e-28 127.5 89 66.3
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.4e-28 127.5 89 67.4
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.4e-28 127.5 89 67.4
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 7.4e-28 127.5 89 65.2
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 7.4e-28 127.5 89 65.2
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 7.4e-28 127.5 89 65.2
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 7.4e-28 127.5 89 69.7
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 9.6e-28 127.1 89 66.3
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 9.6e-28 127.1 89 70.8
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 9.6e-28 127.1 76 73.7
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 9.6e-28 127.1 76 75.0
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 9.6e-28 127.1 76 75.0
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.3e-27 126.7 89 68.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.3e-27 126.7 89 66.3
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.3e-27 126.7 81 74.1
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.3e-27 126.7 89 66.3
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.6e-27 126.3 76 73.7
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.6e-27 126.3 89 66.3
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 1.6e-27 126.3 89 65.2
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.6e-27 126.3 76 77.6
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.6e-27 126.3 89 66.3
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.6e-27 126.3 94 64.9
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 1.6e-27 126.3 89 67.4
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.1e-27 125.9 89 68.5
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 2.1e-27 125.9 77 75.3
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.1e-27 125.9 89 66.3
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 2.1e-27 125.9 86 73.3
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 2.1e-27 125.9 89 69.7
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 2.1e-27 125.9 90 65.6
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 2.1e-27 125.9 81 69.1
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.8e-27 125.6 86 68.6
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.8e-27 125.6 89 67.4
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 2.8e-27 125.6 89 68.5
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 3.7e-27 125.2 76 73.7
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 3.7e-27 125.2 89 68.5
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 3.7e-27 125.2 76 72.4
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 3.7e-27 125.2 82 68.3
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 4.8e-27 124.8 73 76.7
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 4.8e-27 124.8 86 67.4
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 6.2e-27 124.4 86 69.8
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 6.2e-27 124.4 76 72.4
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 8.2e-27 124.0 89 64.0
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 8.2e-27 124.0 89 64.0
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.1e-26 123.6 86 68.6
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.1e-26 123.6 89 66.3
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.1e-26 123.6 76 76.3
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.4e-26 123.2 94 60.6
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.4e-26 123.2 77 71.4
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.4e-26 123.2 76 72.4
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.8e-26 122.9 83 72.3
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 2.4e-26 122.5 86 69.8
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 3.1e-26 122.1 63 88.9
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 3.1e-26 122.1 89 66.3
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.1e-26 122.1 89 65.2
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 4.0e-26 121.7 89 60.7
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 4.0e-26 121.7 89 66.3
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.0e-26 121.7 89 62.9
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.0e-26 121.7 89 62.9
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.0e-26 121.7 89 62.9
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 6.9e-26 120.9 89 64.0
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 6.9e-26 120.9 86 66.3
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 9.0e-26 120.6 89 65.2
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.2e-25 120.2 89 66.3
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.5e-25 119.8 89 62.9
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 2.0e-25 119.4 89 65.2
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 2.0e-25 119.4 77 67.5
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 3.4e-25 118.6 81 66.7
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.4e-25 118.6 89 64.0
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 7.6e-25 117.5 77 67.5
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.3e-24 116.7 81 65.4
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.3e-24 116.7 92 64.1
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.7e-24 116.3 89 62.9
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.2e-24 115.9 86 64.0
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.8e-24 115.2 80 68.8
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 4.9e-24 114.8 89 61.8
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.9e-23 112.8 81 63.0
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.2e-23 112.1 89 60.7
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 9.3e-23 110.5 76 67.1
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.2e-22 110.2 122 49.2
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.6e-22 109.8 89 60.7
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.7e-22 109.0 86 60.5
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.3e-21 105.9 89 59.6
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 3.0e-21 105.5 132 47.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 5.1e-21 104.8 89 56.2
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 5.1e-21 104.8 89 56.2
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 5.1e-21 104.8 89 56.2
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 6.7e-21 104.4 81 60.5
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 8.7e-21 104.0 89 56.2
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.5e-20 103.2 86 55.8
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 2.5e-20 102.4 89 56.2
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.3e-20 102.1 73 63.0
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.6e-19 99.8 86 57.0
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 2.2e-19 99.4 50 92.0
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.1e-18 97.1 82 57.3
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.4e-18 95.9 89 49.4
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 9.0e-18 94.0 58 75.9
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 2.6e-17 92.4 94 48.9
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 7.6e-17 90.9 77 57.1
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 1.3e-16 90.1 86 50.0
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 2.1e-14 82.8 85 42.4
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 3.6e-14 82.0 73 52.1
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 5.1e-13 78.2 92 47.8
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.1e-10 70.5 63 47.6
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.1e-10 70.5 36 88.9
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 9.1e-10 67.4 36 83.3
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.2e-08 62.8 36 69.4
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 3.8e-08 62.0 44 65.9
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 8.5e-08 60.8 68 42.6
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.5e-07 59.3 40 62.5
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 5.5e-07 58.2 49 55.1
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 2.1e-06 56.2 31 77.4


User provided reference genes

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