Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1523.1 779 100.0
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.2e-243 844.3 886 56.3
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 1.6e-242 843.2 882 56.1
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 2.1e-242 842.8 882 56.0
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 4.7e-242 841.6 886 56.2
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 6.1e-242 841.3 882 55.7
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 6.1e-242 841.3 884 56.2
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 1.4e-241 840.1 882 55.8
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 1.4e-241 840.1 882 55.8
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 6.8e-241 837.8 878 55.6
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 9.8e-240 833.9 886 55.5
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 2.9e-239 832.4 882 55.2
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 6.3e-239 831.2 882 55.1
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 5.4e-238 828.2 882 55.1
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 7.0e-238 827.8 882 54.6
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 9.2e-238 827.4 882 55.1
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 2.7e-237 825.9 882 55.1
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 9.8e-232 807.4 878 54.3
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 9.5e-227 790.8 899 52.7
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 2.7e-221 772.7 890 51.9
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 3.8e-207 725.7 747 56.9
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 2.7e-205 719.5 896 49.2
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 8.7e-204 714.5 890 48.0
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 3.3e-203 712.6 895 48.2
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 9.6e-203 711.1 895 47.9
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 6.2e-202 708.4 896 47.9
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 6.2e-202 708.4 896 48.0
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 9.0e-201 704.5 892 47.5
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 2.2e-199 699.9 895 46.5
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 8.4e-199 698.0 893 47.1
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 1.1e-198 697.6 896 47.1
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 1.1e-198 697.6 893 47.1
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 3.2e-198 696.0 892 47.8
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 3.2e-198 696.0 900 47.4
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 2.7e-197 693.0 893 47.3
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 4.6e-197 692.2 891 46.4
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 1.7e-196 690.3 890 46.5
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 3.0e-196 689.5 889 46.9
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 3.0e-196 689.5 892 46.7
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 6.6e-196 688.3 895 46.4
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 6.6e-196 688.3 898 46.3
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 1.1e-195 687.6 896 46.7
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 1.5e-195 687.2 893 46.7
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 4.3e-195 685.6 895 46.6
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 9.6e-195 684.5 893 46.7
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 2.1e-194 683.3 891 45.8
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 3.6e-194 682.6 899 46.3
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 4.8e-194 682.2 899 46.2
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 8.1e-194 681.4 893 46.0
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 1.8e-193 680.2 900 45.7
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 2.4e-193 679.9 893 46.2
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 3.1e-193 679.5 893 46.4
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 5.3e-193 678.7 839 48.6
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 5.3e-193 678.7 893 46.4
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 1.5e-192 677.2 892 46.5
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 4.5e-192 675.6 901 45.7
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 1.3e-191 674.1 865 46.5
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 1.7e-191 673.7 900 45.9
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 4.2e-190 669.1 892 45.4
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 7.1e-190 668.3 899 45.1
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 1.2e-189 667.5 893 45.8
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 1.2e-189 667.5 892 45.0
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 2.7e-189 666.4 891 44.4
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 1.0e-188 664.5 892 44.8
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 2.3e-188 663.3 889 45.1
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 1.9e-187 660.2 892 44.8
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 2.5e-187 659.8 892 44.6
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 5.6e-187 658.7 892 44.5
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 7.4e-187 658.3 869 44.9
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 9.6e-187 657.9 892 44.3
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 2.8e-186 656.4 892 44.4
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 3.7e-186 656.0 892 44.4
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 3.7e-186 656.0 882 45.2
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 6.2e-186 655.2 891 44.2
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 1.1e-185 654.4 911 43.9
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 1.4e-185 654.1 895 44.8
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 1.4e-185 654.1 887 44.5
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.8e-185 653.7 876 45.0
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 2.4e-185 653.3 896 45.0
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 3.1e-185 652.9 845 46.6
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 1.2e-184 651.0 892 44.2
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 5.8e-184 648.7 896 44.1
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 7.6e-184 648.3 908 43.8
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 1.0e-183 647.9 897 44.1
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.9e-183 646.4 944 44.0
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 2.5e-182 643.3 899 44.6
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 3.2e-182 642.9 892 44.3
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 4.2e-182 642.5 896 44.5
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 6.7e-180 635.2 960 43.0
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 1.1e-179 634.4 920 43.5
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 7.4e-179 631.7 892 43.8
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 1.4e-177 627.5 841 46.0
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 1.8e-177 627.1 882 43.5
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 4.1e-177 625.9 880 44.2
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 9.0e-177 624.8 892 43.5
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 1.0e-175 621.3 952 42.0
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 5.1e-172 609.0 881 41.9
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 5.1e-172 609.0 881 41.8
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 1.3e-170 604.4 1014 40.0
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 6.3e-170 602.1 891 42.0
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 5.3e-169 599.0 827 44.3
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 7.7e-168 595.1 855 42.2
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 1.2e-165 587.8 703 50.2
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 4.6e-165 585.9 705 50.2
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 5.7e-163 578.9 709 49.8
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 6.5e-159 565.5 908 40.3
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 7.9e-157 558.5 835 41.0
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 5.9e-152 542.3 702 47.3
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 9.4e-150 535.0 846 38.9
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 6.1e-141 505.8 727 44.7
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 1.4e-137 494.6 869 38.6
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 1.4e-137 494.6 741 43.7
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.5e-136 489.6 795 40.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.1e-133 480.7 710 43.2
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 2.7e-133 480.3 915 36.2
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 1.6e-128 464.5 715 41.3
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 2.8e-125 453.8 856 36.8
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 1.7e-114 417.9 616 44.2
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 2.7e-112 410.6 742 38.1
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 1.2e-109 401.7 487 49.5
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.2e-108 396.4 578 41.5
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.8e-108 396.0 454 54.0
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 1.7e-106 391.3 729 38.0
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 3.2e-105 387.1 556 40.8
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 8.4e-66 256.1 376 39.4
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.0e-58 230.3 305 45.2
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.4e-57 228.8 693 30.2
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 3.4e-43 181.0 282 41.8
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 2.4e-36 158.3 827 24.3
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.4e-31 142.5 277 37.5
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.0e-31 141.0 301 37.2
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 9.7e-30 136.3 122 59.8
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.0e-27 128.6 119 56.3
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 1.7e-26 125.6 287 27.5
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 4.7e-24 117.5 126 50.0
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 1.0e-23 116.3 156 39.7
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 2.3e-23 115.2 670 22.7
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 3.4e-22 111.3 858 23.2
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 6.3e-21 107.1 103 55.3
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 9.1e-20 103.2 153 37.3
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.8e-15 89.0 103 43.7
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.6e-14 85.1 125 43.2
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 4.9e-13 80.9 98 46.9
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 4.3e-09 67.8 83 37.3
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 1.5e-06 59.3 87 35.6


User provided reference genes

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