Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 3.6e-144 515.0 277 100.0
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.1e-83 313.2 276 65.2
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.0e-82 309.3 282 63.5
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.3e-72 277.3 279 59.9
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 4.8e-56 222.2 289 52.9
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 3.4e-54 216.1 271 49.4
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 3.4e-54 216.1 271 49.4
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.4e-52 210.7 297 49.5
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 2.5e-52 209.9 283 47.0
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 2.5e-52 209.9 283 47.0
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 4.2e-52 209.1 283 47.0
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 5.5e-52 208.8 286 46.2
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 6.3e-48 195.3 260 46.5
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 8.2e-48 194.9 256 48.0
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 3.1e-47 193.0 289 45.3
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 9.1e-47 191.4 261 45.6
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 2.6e-46 189.9 288 51.0
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 9.4e-44 181.4 253 44.3
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 4.4e-41 172.6 263 44.9
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.7e-40 170.6 285 43.2
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.1e-39 167.9 220 52.7
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 4.1e-39 166.0 264 45.5
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.2e-38 164.5 237 48.1
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 7.7e-38 161.8 258 42.6
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 1.0e-37 161.4 290 40.3
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.0e-34 151.4 218 45.4
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 3.1e-31 139.8 274 39.4
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 2.0e-30 137.1 260 40.8
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 7.7e-30 135.2 284 39.1
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 2.9e-29 133.3 265 38.9
Thhalv10028281m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.5e-28 131.0 198 47.5
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 4.2e-28 129.4 274 37.6
CARHR279290 Cardamine hirsuta HOM05D006887 ORTHO05D004325 5.5e-28 129.0 188 51.1
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 1.2e-27 127.9 257 39.3
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 4.7e-27 125.9 240 39.2
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.1e-27 125.6 177 47.5
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 1.8e-26 124.0 259 38.6
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.3e-26 123.6 204 41.7
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 3.0e-26 123.2 279 34.4
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 5.2e-26 122.5 276 35.5
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 1.5e-25 120.9 274 37.6
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 4.4e-25 119.4 303 34.0
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 7.5e-25 118.6 254 36.6
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 7.5e-25 118.6 293 34.1
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 2.2e-24 117.1 287 34.5
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 2.2e-24 117.1 287 34.5
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 2.8e-24 116.7 178 43.3
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 2.8e-24 116.7 178 43.3
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 2.8e-24 116.7 275 36.4
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 3.7e-24 116.3 212 41.0
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 4.8e-24 115.9 271 35.8
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.3e-24 115.5 186 41.9
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 8.3e-24 115.2 229 38.0
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 1.1e-23 114.8 275 34.2
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 1.1e-23 114.8 215 38.1
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 1.8e-23 114.0 180 41.7
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 2.4e-23 113.6 257 35.8
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 4.1e-23 112.8 266 34.6
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 5.4e-23 112.5 215 36.3
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 5.4e-23 112.5 215 36.3
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 5.4e-23 112.5 215 36.3
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 7.0e-23 112.1 160 44.4
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 2.7e-22 110.2 277 36.1
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 5.9e-22 109.0 196 39.8
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 7.7e-22 108.6 133 45.1
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.7e-21 107.5 188 41.0
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.7e-21 107.5 166 43.4
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.7e-21 107.5 235 37.4
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 2.2e-21 107.1 168 40.5
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 8.5e-21 105.1 263 34.2
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.1e-20 104.8 269 33.8
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 7.7e-14 82.0 47 74.5
Carub.0007s3592 Capsella rubella HOM05D006887 ORTHO05D004325 1.0e-13 81.6 99 49.5
BraA04t16923Z Brassica rapa HOM05D006887 ORTHO05D004325 3.8e-13 79.7 185 38.4
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.9e-12 77.4 176 31.8
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 5.6e-12 75.9 51 62.7
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 7.3e-12 75.5 125 36.0
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.5e-12 75.1 176 31.2
Aa31LG8G6760 Aethionema arabicum HOM05D006887 ORTHO05D004325 6.1e-11 72.4 125 33.6
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.1e-11 72.4 125 35.2
CARHR112470 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.3e-10 70.5 307 29.6
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 4.0e-10 69.7 135 32.6
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.5e-09 67.8 183 27.9
AT5G40070 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.4e-09 66.6 101 45.5
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 3.4e-09 66.6 201 30.8
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 4.4e-09 66.2 56 58.9
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 9.8e-09 65.1 45 66.7
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 9.8e-09 65.1 56 58.9
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.7e-08 64.3 123 38.2
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 4.9e-08 62.8 144 26.4
MBI16_g16368_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 8.3e-08 62.0 145 29.7
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.1e-07 61.6 41 68.3
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.1e-07 61.6 48 60.4
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 1.1e-07 61.6 183 28.4
FAN27G3405 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.4e-07 61.2 260 25.4
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 1.8e-07 60.8 176 26.1
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 3.2e-07 60.1 41 65.9
Haze_14940 Corylus avellana HOM05D006887 ORTHO05D009969 3.2e-07 60.1 155 26.5
arahy.Tifrunner.gnm1.ann1.4RS8DG Arachis hypogaea HOM05D008089 ORTHO05D000166 4.1e-07 59.7 245 26.5
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 4.1e-07 59.7 176 26.7
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 7.0e-07 58.9 43 62.8
FvH4_6g46801 Fragaria vesca HOM05D006887 ORTHO05D004325 9.2e-07 58.5 49 49.0
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.2e-06 58.2 197 27.4
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.2e-06 58.2 41 65.9
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 1.2e-06 58.2 217 27.2
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 1.2e-06 58.2 181 27.6
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 1.2e-06 58.2 181 27.6
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.6e-06 57.8 137 32.8
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.6e-06 57.8 137 32.8
FvH4_2g27520 Fragaria vesca HOM05D000307 ORTHO05D000166 1.6e-06 57.8 130 27.7
FAN15G0593 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.6e-06 57.8 130 27.7
FAN24G2406 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.6e-06 57.8 130 27.7
Lalb_Chr05g0223381 Lupinus albus HOM05D000307 ORTHO05D000166 1.6e-06 57.8 199 23.1
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 1.6e-06 57.8 50 44.0
QL10p050899 Quercus lobata HOM05D006887 ORTHO05D009969 1.6e-06 57.8 46 56.5
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 2.0e-06 57.4 41 63.4
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 2.0e-06 57.4 46 56.5
Haze_01459 Corylus avellana HOM05D006887 ORTHO05D009969 2.0e-06 57.4 46 56.5
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.7e-06 57.0 41 63.4
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 2.7e-06 57.0 217 25.3
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 4.6e-06 56.2 41 63.4
FAN04G1442 Fragaria x ananassa HOM05D016120 ORTHO05D013324 4.6e-06 56.2 144 27.8
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 4.6e-06 56.2 110 28.2
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 5.9e-06 55.8 133 29.3
Prupe.3G148900 Prunus persica HOM05D000307 ORTHO05D000166 5.9e-06 55.8 210 23.8
QL06p031925 Quercus lobata HOM05D000307 ORTHO05D000166 7.8e-06 55.5 128 26.6


User provided reference genes

Program Settings