Gene: AT5G27090

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G27090
  • Transcript Identifier AT5G27090.1
  • Gene Type Coding gene
  • Location Chr5 : 9531845-9532408 : positive

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid AT5G27090.1
  • symbol AGL54
  • uniprot Q9S9U2

Descriptions

  • Description AGAMOUS-like 54
  • Computational description AGAMOUS-like 54 (AGL54); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: antipodal cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 53 (TAIR:AT5G27070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II1
GO:0045944
IEA
Gene Ontologypositive regulation of transcription by RNA polymerase II
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000987
IEA
Gene Ontologycis-regulatory region sequence-specific DNA binding
GO:0000987
IEA
InterProcis-regulatory region sequence-specific DNA binding
GO:0000981
IBA
IEA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific1
GO:0000981
IEA
InterProDNA-binding transcription factor activity, RNA polymerase II-specific
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding1
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding2
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036879 Transcription factor, MADS-box superfamily
IPR002100 Transcription factor, MADS-box
IPR033897 MADS SRF-like
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)