Gene: AT5G40220
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G40220
- Transcript Identifier AT5G40220.1
- Gene Type Coding gene
- Location Chr5 : 16078390-16079364 : negative
Gene Family Information
- ID HOM05D006887
- #Genes/#Species 117/25
- Phylogenetic origin
- ID ORTHO05D004325
- #Genes/#Species 184/17
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT5G40220.1
- symbol AGL43
- uniprot Q9FL10
Descriptions
- Description AGAMOUS-like 43
- Computational description AGAMOUS-like 43 (AGL43); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 75 (TAIR:AT5G41200.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045944 | IEA | Gene Ontology | positive regulation of transcription by RNA polymerase II | |
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
| GO:0006357 | IBA | Gene Ontology | regulation of transcription by RNA polymerase II | 1 |
| GO:0006355 | ISS | Gene Ontology | regulation of transcription, DNA-templated | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G41200 |
| GO:0000987 | IEA | GOA Database | cis-regulatory region sequence-specific DNA binding | |
| GO:0000987 | IEA | InterPro | cis-regulatory region sequence-specific DNA binding | |
| GO:0000981 | IEA | GOA Database | DNA-binding transcription factor activity, RNA polymerase II-specific | |
| GO:0000981 | IBA | Gene Ontology | DNA-binding transcription factor activity, RNA polymerase II-specific | 1 |
| GO:0000981 | IEA | InterPro | DNA-binding transcription factor activity, RNA polymerase II-specific | |
| GO:0046983 | IEA | Gene Ontology | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0000978 | IBA | Gene Ontology | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 1 |
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |