Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.3e-274 949.1 482 100.0
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 8.5e-226 786.9 489 85.9
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 5.2e-215 751.1 511 75.9
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 3.7e-205 718.4 466 77.3
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 4.7e-200 701.4 436 80.7
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 1.3e-194 683.3 491 76.6
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 2.9e-194 682.2 491 76.6
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.9e-193 679.5 491 76.2
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 2.5e-193 679.1 491 76.6
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 3.3e-193 678.7 491 76.6
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 1.2e-192 676.8 490 75.9
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 6.0e-187 657.9 458 79.3
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.1e-184 649.4 466 71.2
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 5.8e-174 614.8 463 69.8
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 1.1e-169 600.5 470 67.0
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 3.2e-164 582.4 469 66.5
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 2.1e-163 579.7 467 65.5
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.4e-159 567.0 487 65.7
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 1.8e-159 566.6 496 63.9
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 2.5e-121 439.9 328 71.3
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.7e-88 330.9 443 43.8
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 3.7e-88 329.7 448 44.6
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 4.1e-87 326.2 441 43.1
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 4.1e-87 326.2 452 45.1
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 2.0e-86 323.9 437 47.1
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.6e-83 314.3 434 44.0
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 8.0e-83 312.0 461 40.3
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 1.4e-82 311.2 479 40.9
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 3.0e-82 310.1 303 53.1
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 6.8e-82 308.9 476 41.4
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 2.6e-81 307.0 478 40.6
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 4.4e-81 306.2 454 41.0
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 2.2e-80 303.9 433 41.3
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 3.7e-80 303.1 446 40.8
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 1.4e-79 301.2 442 41.9
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.8e-79 300.8 489 37.8
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.8e-79 300.8 448 40.8
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 4.1e-79 299.7 461 39.7
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 5.4e-79 299.3 461 40.6
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.0e-79 298.9 429 41.3
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.0e-79 298.9 459 41.4
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 9.2e-79 298.5 448 40.8
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.5e-78 296.6 427 41.5
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 4.5e-78 296.2 427 41.7
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.5e-78 296.2 461 39.9
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 5.9e-78 295.8 446 41.5
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 7.8e-78 295.4 439 39.6
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 7.8e-78 295.4 447 41.6
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.0e-77 295.0 433 41.3
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.0e-77 295.0 445 41.6
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 2.3e-77 293.9 447 42.3
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 2.3e-77 293.9 444 38.7
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.9e-76 290.8 387 43.2
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 4.3e-76 289.7 367 44.4
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 5.6e-76 289.3 532 40.6
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 7.3e-76 288.9 489 39.5
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 4.7e-75 286.2 429 42.9
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 6.1e-75 285.8 387 42.4
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 8.0e-75 285.4 432 39.4
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 8.0e-75 285.4 363 46.8
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.8e-74 284.3 432 39.6
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 2.3e-74 283.9 486 37.2
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 3.1e-74 283.5 483 38.9
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 6.8e-74 282.3 424 41.7
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.8e-74 282.3 485 39.0
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 8.9e-74 282.0 369 45.8
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 8.9e-74 282.0 490 38.0
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.2e-73 281.6 486 39.3
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.2e-73 281.6 435 39.8
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.2e-73 281.6 380 44.5
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.5e-73 281.2 444 40.3
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 1.5e-73 281.2 480 37.9
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 3.4e-73 280.0 463 40.4
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 3.4e-73 280.0 385 44.9
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 5.8e-73 279.3 378 43.1
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 9.8e-73 278.5 385 41.6
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 4.9e-72 276.2 452 40.3
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 2.4e-71 273.9 512 41.8
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 4.1e-71 273.1 383 42.0
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 1.2e-70 271.6 406 40.6
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.2e-70 271.6 453 40.4
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 1.6e-70 271.2 454 40.5
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.0e-70 270.8 435 38.6
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 4.6e-70 269.6 386 39.4
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 7.8e-70 268.9 454 39.2
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 7.8e-70 268.9 450 39.6
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 7.8e-70 268.9 440 40.0
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.0e-69 268.5 450 39.3
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.3e-69 268.1 440 40.0
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 3.0e-69 266.9 514 37.0
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 1.9e-68 264.2 482 37.3
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.3e-68 263.1 428 40.2
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 7.3e-68 262.3 424 40.6
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 1.2e-67 261.5 363 43.8
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.6e-67 261.2 373 42.6
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 2.1e-67 260.8 462 37.0
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 2.1e-67 260.8 449 37.6
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 6.2e-67 259.2 387 40.6
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 5.2e-66 256.1 481 37.0
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 2.4e-63 247.3 428 38.1
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 7.1e-63 245.7 438 37.4
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 7.1e-63 245.7 396 39.1
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 9.2e-63 245.4 485 34.4
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.6e-62 244.6 421 39.2
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.1e-60 238.4 413 38.0
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 3.1e-58 230.3 403 39.7
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.3e-56 224.9 497 33.0
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 2.2e-56 224.2 463 35.6
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 7.1e-55 219.2 263 45.2
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.6e-54 218.0 441 35.8
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 2.1e-54 217.6 307 42.3
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 3.5e-54 216.9 424 37.7
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 3.0e-53 213.8 343 39.7
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 8.6e-53 212.2 426 35.7
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.9e-52 211.1 219 54.3
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 7.3e-52 209.1 341 39.6
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 1.2e-51 208.4 415 35.4
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 3.6e-51 206.8 507 32.0
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.2e-48 197.6 336 37.5
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 2.7e-46 190.7 346 34.4
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 6.6e-45 186.0 307 38.8
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.3e-44 183.7 330 37.3
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 4.3e-44 183.3 292 40.4
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.3e-43 181.8 356 37.1
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 3.6e-43 180.3 521 33.0
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 1.1e-42 178.7 514 33.7
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 9.0e-42 175.6 172 52.9
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 2.0e-41 174.5 486 27.8
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 8.4e-40 169.1 510 32.5
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.1e-39 168.7 346 35.5
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 7.1e-39 166.0 310 36.8
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 1.7e-37 161.4 229 41.5
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 2.3e-37 161.0 305 36.7
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 8.7e-37 159.1 258 39.1
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 8.7e-37 159.1 146 54.8
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-36 158.7 179 48.0
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 2.0e-33 147.9 109 67.9
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 2.6e-33 147.5 302 34.8
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 1.3e-32 145.2 155 46.5
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.2e-31 140.6 373 31.6
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.4e-31 139.8 397 29.5
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 7.1e-31 139.4 305 35.4
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 9.3e-31 139.0 301 33.2
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 9.3e-31 139.0 147 49.7
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 4.6e-30 136.7 197 43.7
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 1.8e-29 134.8 151 47.0
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 1.3e-27 128.6 236 39.0
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.0e-25 121.3 236 36.0
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 4.5e-25 120.2 100 55.0
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 3.5e-22 110.5 140 41.4
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 2.3e-21 107.8 285 30.2
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 6.7e-21 106.3 93 55.9
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.5e-20 104.4 303 30.0
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 4.8e-19 100.1 220 33.2
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.8e-19 100.1 460 25.9
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 3.8e-16 90.5 114 43.0
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-15 89.0 260 30.8
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-15 89.0 260 30.8
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.6e-14 85.1 232 27.6
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.0e-13 80.9 144 34.0
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 5.1e-13 80.1 157 32.5
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 4.3e-12 77.0 96 43.8
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.9e-10 69.7 211 30.3
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 1.1e-07 62.4 72 47.2
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 2.5e-07 61.2 114 33.3
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 2.7e-06 57.8 57 47.4


User provided reference genes

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