Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 0.0e+00 1176.8 720 100.0
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 0.0e+00 1149.0 603 97.2
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 0.0e+00 1148.3 603 97.5
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 0.0e+00 1143.6 720 91.5
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 0.0e+00 1122.1 720 91.7
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 0.0e+00 1113.6 721 87.7
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 0.0e+00 1107.4 721 90.4
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 0.0e+00 1106.7 604 94.5
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 0.0e+00 1105.5 581 98.3
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 0.0e+00 1104.0 604 94.4
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 0.0e+00 1097.8 603 93.0
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 0.0e+00 1092.8 747 89.4
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 0.0e+00 1091.6 749 89.2
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 8.9e-296 1020.0 608 83.6
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 6.6e-291 1003.8 607 83.7
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 6.6e-291 1003.8 617 84.0
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 1.9e-290 1002.3 614 83.2
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 4.3e-290 1001.1 611 84.3
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.8e-289 998.4 616 83.8
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 8.1e-289 996.9 607 83.4
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.4e-288 996.1 607 83.4
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 1.5e-287 992.6 664 77.3
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 2.0e-287 992.3 612 82.7
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 2.6e-287 991.9 609 82.8
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 4.9e-286 987.6 610 81.8
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 4.9e-286 987.6 615 82.6
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 6.4e-286 987.3 608 83.1
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 1.4e-285 986.1 605 81.8
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 2.4e-285 985.3 625 81.4
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 3.0e-283 978.4 512 92.4
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 5.1e-283 977.6 607 81.9
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 8.6e-283 976.9 609 81.1
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.1e-282 976.5 615 82.3
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 2.4e-280 968.8 612 80.4
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 3.1e-280 968.4 606 81.7
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 6.9e-280 967.2 617 80.2
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 1.2e-279 966.5 606 81.2
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.5e-279 966.1 629 80.4
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 2.6e-279 965.3 598 81.4
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 2.2e-278 962.2 614 80.3
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 3.8e-278 961.4 598 81.3
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 4.9e-278 961.1 616 79.7
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 1.1e-277 959.9 598 81.3
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 5.4e-277 957.6 605 80.3
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 7.1e-277 957.2 606 80.0
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.2e-276 956.4 608 81.7
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.3e-275 953.0 607 81.4
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 1.7e-275 952.6 607 81.2
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.7e-275 952.6 607 81.2
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 2.3e-275 952.2 599 80.5
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 3.0e-275 951.8 606 81.5
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 6.6e-275 950.7 643 75.7
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 8.7e-275 950.3 609 79.5
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 1.5e-274 949.5 607 80.4
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 8.1e-273 943.7 614 80.1
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 1.1e-272 943.3 614 79.6
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 9.0e-272 940.3 606 78.9
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.6e-271 938.7 603 78.8
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 7.6e-271 937.2 623 76.9
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 3.8e-270 934.9 605 80.8
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 6.4e-270 934.1 561 81.6
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 1.1e-269 933.3 603 78.6
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 1.9e-269 932.6 608 78.8
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 3.2e-269 931.8 616 78.1
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 9.3e-269 930.2 613 78.1
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 1.8e-267 926.0 610 77.2
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 3.0e-267 925.2 647 74.8
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 8.7e-267 923.7 613 75.5
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.5e-266 922.2 608 75.7
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 3.3e-266 921.8 694 71.8
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 7.4e-266 920.6 612 77.9
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 9.6e-266 920.2 659 73.4
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 6.2e-265 917.5 500 87.6
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 3.1e-264 915.2 612 76.3
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 5.3e-264 914.4 560 81.2
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 5.8e-263 911.0 613 76.7
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 7.4e-258 894.0 646 73.1
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 9.6e-258 893.6 597 79.6
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.4e-256 889.0 608 73.8
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 9.0e-256 887.1 597 74.9
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 3.8e-254 881.7 605 72.9
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 8.4e-254 880.6 606 72.6
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 8.4e-254 880.6 570 80.4
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 7.1e-253 877.5 603 74.3
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 7.1e-253 877.5 608 73.7
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 1.1e-250 870.2 563 79.4
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 4.3e-250 868.2 597 73.0
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 7.4e-250 867.5 612 75.5
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 8.2e-249 864.0 476 86.3
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 1.0e-246 857.1 609 74.2
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 3.8e-246 855.1 615 75.6
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 4.6e-236 821.6 603 74.0
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.5e-234 816.6 525 76.6
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 6.9e-232 807.7 509 81.5
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 9.4e-229 797.3 617 70.8
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.2e-228 797.0 643 64.9
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 3.2e-221 772.3 560 67.5
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.4e-219 766.9 574 67.1
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 4.2e-213 745.3 596 65.4
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 7.7e-207 724.5 504 68.8
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.4e-200 703.7 404 83.9
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.6e-188 663.7 341 90.6
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 8.9e-179 631.3 544 57.5
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 1.6e-172 610.5 489 59.9
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 2.4e-171 606.7 470 61.3
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.2e-170 604.4 616 58.6
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 3.0e-166 589.7 360 78.9
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.4e-160 570.1 424 73.6
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.0e-142 511.5 434 66.1
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 5.3e-131 472.6 502 48.8
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 5.0e-129 466.1 492 54.9
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 8.8e-126 455.3 571 45.0
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 7.7e-122 442.2 255 79.6
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 1.3e-113 414.8 544 44.7
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.2e-103 381.7 513 40.2
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.2e-100 370.9 214 83.2
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 7.0e-91 339.3 179 88.8
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 5.2e-86 323.2 263 63.5
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 2.8e-84 317.4 272 71.0
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 3.9e-73 280.4 157 81.5
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.9e-59 235.0 172 66.3
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 7.8e-50 203.0 237 57.8
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.1e-43 182.6 97 87.6
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 8.1e-39 166.4 170 62.4
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 3.1e-38 164.5 169 62.1
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 8.4e-36 156.4 192 49.5
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.5e-32 145.6 96 76.0
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.9e-24 118.6 76 81.6
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 5.7e-24 117.1 176 48.9
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 1.0e-17 96.3 112 50.0
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 5.1e-17 94.0 201 57.7
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.1e-09 67.4 281 29.9


User provided reference genes

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