Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 4.6e-230 800.8 389 100.0
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 4.0e-218 761.1 389 94.6
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 1.3e-216 756.1 387 94.1
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 2.4e-215 751.9 387 92.8
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 1.2e-214 749.6 387 93.5
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 1.3e-211 739.6 382 93.2
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 2.8e-211 738.4 387 91.5
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 2.8e-211 738.4 387 91.5
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 9.9e-209 729.9 387 90.2
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 2.9e-208 728.4 387 89.7
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 4.6e-206 721.1 387 89.7
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 2.2e-187 659.1 377 82.2
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 6.1e-174 614.4 374 75.9
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 6.3e-171 604.4 372 75.0
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.1e-170 603.6 364 77.5
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 2.0e-169 599.4 372 74.5
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 1.7e-168 596.3 372 73.4
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 2.2e-168 595.9 372 73.7
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 5.0e-168 594.7 372 72.6
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 8.5e-168 594.0 372 73.7
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.5e-167 593.2 375 73.3
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 5.5e-167 591.3 369 74.8
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 9.4e-167 590.5 363 73.8
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 2.7e-166 589.0 364 76.1
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 3.6e-166 588.6 372 73.4
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 3.6e-166 588.6 365 75.9
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 8.0e-166 587.4 372 73.1
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 1.8e-165 586.3 369 73.2
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 6.8e-165 584.3 372 72.0
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 8.8e-165 583.9 365 74.5
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 2.0e-164 582.8 364 74.5
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 3.4e-164 582.0 364 74.5
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 7.5e-164 580.9 365 73.2
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 2.2e-163 579.3 372 71.8
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 2.2e-163 579.3 375 73.1
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 2.2e-163 579.3 368 72.6
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 8.3e-163 577.4 368 71.7
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 1.8e-162 576.2 372 72.0
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 2.4e-162 575.9 364 74.7
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 3.1e-162 575.5 360 75.6
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 4.1e-162 575.1 372 71.8
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 7.0e-162 574.3 367 71.9
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 7.0e-162 574.3 361 72.9
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 7.0e-162 574.3 364 73.4
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 7.0e-162 574.3 365 73.7
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 9.1e-162 573.9 368 72.3
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 9.1e-162 573.9 374 71.4
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.2e-161 573.5 364 73.9
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 2.0e-161 572.8 364 72.8
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 2.7e-161 572.4 374 69.5
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 3.5e-161 572.0 372 72.3
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 4.5e-161 571.6 372 71.2
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 5.9e-161 571.2 373 71.6
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 1.3e-160 570.1 361 72.0
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 1.7e-160 569.7 366 70.8
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.2e-160 569.3 365 72.6
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 2.2e-160 569.3 372 71.0
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 2.9e-160 568.9 372 71.2
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 3.8e-160 568.5 372 71.0
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 5.0e-160 568.2 367 71.1
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 1.5e-159 566.6 366 72.1
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 1.9e-159 566.2 413 66.1
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 2.5e-159 565.8 364 72.5
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 5.5e-159 564.7 375 71.5
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 7.2e-159 564.3 368 71.5
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 7.2e-159 564.3 366 69.9
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 9.4e-159 563.9 361 71.2
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 9.4e-159 563.9 391 68.5
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 1.2e-158 563.5 373 71.6
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.7e-158 562.4 356 74.4
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.7e-158 562.4 356 74.4
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 3.6e-158 562.0 361 70.6
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 8.0e-158 560.8 377 68.7
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 8.0e-158 560.8 365 72.1
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 1.0e-157 560.5 364 72.8
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 1.8e-157 559.7 375 68.8
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 1.8e-157 559.7 367 69.2
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 2.3e-157 559.3 364 72.5
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 4.0e-157 558.5 363 71.1
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 1.2e-156 557.0 361 70.9
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 2.6e-156 555.8 366 69.4
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 3.4e-156 555.4 370 69.7
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 4.4e-156 555.1 364 71.2
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 4.4e-156 555.1 363 70.5
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 5.7e-156 554.7 361 70.9
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 5.7e-156 554.7 365 69.3
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 9.8e-156 553.9 365 70.1
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 1.7e-155 553.1 372 69.1
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 4.8e-155 551.6 364 69.5
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 6.3e-155 551.2 357 71.7
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 1.1e-154 550.4 372 68.8
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 3.1e-154 548.9 412 64.8
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 5.4e-154 548.1 374 67.6
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 2.0e-153 546.2 364 69.2
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 2.7e-153 545.8 400 64.8
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 4.5e-153 545.0 370 69.7
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 4.5e-153 545.0 361 69.8
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 5.9e-153 544.7 362 69.3
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 7.7e-153 544.3 382 65.7
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 1.0e-152 543.9 369 67.8
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 1.0e-152 543.9 363 70.2
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.3e-152 543.5 392 64.8
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.3e-152 543.5 362 69.1
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 2.3e-152 542.7 383 66.8
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 2.3e-152 542.7 363 70.0
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 8.6e-152 540.8 364 68.7
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 1.5e-151 540.0 329 76.3
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 3.3e-151 538.9 366 69.1
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 7.2e-151 537.7 366 68.9
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 2.8e-150 535.8 375 69.1
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 4.7e-150 535.0 371 67.9
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.4e-149 533.5 366 68.6
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 1.8e-149 533.1 366 66.1
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 2.6e-148 529.3 352 70.5
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 1.0e-144 517.3 397 62.7
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 1.0e-144 517.3 397 62.7
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 1.3e-144 516.9 350 67.1
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 1.9e-143 513.1 364 64.8
Sc11g0009110 Simmondsia chinensis HOM05D003957 ORTHO05D004833 3.4e-140 502.3 319 73.0
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 6.0e-137 491.5 360 62.8
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 1.1e-135 487.3 313 70.0
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 6.8e-133 478.0 336 65.2
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 3.7e-131 472.2 364 62.4
DCAR_029679 Daucus carota HOM05D003957 ORTHO05D004833 3.9e-128 462.2 319 66.8
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 8.1e-126 454.5 343 64.7
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 1.3e-123 447.2 342 59.4
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 1.9e-122 443.4 325 64.0
Aa31LG10G17380 Aethionema arabicum HOM05D003957 ORTHO05D004833 1.3e-120 437.2 343 60.9
Psat7g196440 Pisum sativum HOM05D003957 ORTHO05D004833 9.6e-119 431.0 311 66.9
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 1.5e-116 423.7 353 57.5
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 2.6e-116 422.9 360 56.4
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 2.1e-113 413.3 322 59.3
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 7.3e-111 404.8 356 55.3
Glyma.05G135100 Glycine max HOM05D003957 ORTHO05D004833 6.9e-109 398.3 246 76.0
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 2.2e-107 393.3 287 62.0
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 4.6e-105 385.6 373 52.8
Lalb_Chr01g0000361 Lupinus albus HOM05D003957 ORTHO05D004833 7.3e-103 378.3 250 71.6
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 2.0e-100 370.2 330 50.9
Carub.0005s3012 Capsella rubella HOM05D003957 ORTHO05D004833 9.9e-100 367.9 253 68.4
HPP92_013484 Vanilla planifolia HOM05D003957 ORTHO05D004833 3.4e-92 342.8 216 73.6
CARHR291460 Cardamine hirsuta HOM05D003957 ORTHO05D004833 1.2e-84 317.8 191 74.9
Aa31LG11G7420 Aethionema arabicum HOM05D003957 ORTHO05D004833 1.4e-82 310.8 158 92.4
MCO14G372 Micromonas commoda HOM05D003957 ORTHO05D004833 2.5e-79 300.1 332 46.4
Aa31LG11G7410 Aethionema arabicum HOM05D003957 ORTHO05D004833 2.6e-76 290.0 167 82.6
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 5.7e-71 272.3 368 41.8
Cre15.g636896 Chlamydomonas reinhardtii HOM05D003957 ORTHO05D004833 1.8e-61 240.7 590 28.8
PRCOL_00006504 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 1.9e-58 230.7 343 37.3
PRCOL_00000364 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 5.5e-58 229.2 319 41.1
MCO15G235 Micromonas commoda HOM05D003957 ORTHO05D004833 1.7e-51 207.6 278 41.4
Ah.00g001360 Amaranthus hybridus HOM05D003957 ORTHO05D004833 1.8e-45 187.6 144 59.0
FAN03G1487 Fragaria x ananassa HOM05D003957 ORTHO05D004833 5.0e-43 179.5 133 57.1
HPP92_013483 Vanilla planifolia HOM05D003957 ORTHO05D004833 2.1e-41 174.1 133 56.4
CSS0043854 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 9.8e-39 165.2 132 55.3
unitig_749.g13714 Utricularia gibba HOM05D003957 ORTHO05D004833 5.2e-32 142.9 85 77.6
unitig_749.g13713 Utricularia gibba HOM05D003957 ORTHO05D004833 2.9e-30 137.1 126 50.0
PRCOL_00003547 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 1.6e-28 131.3 317 30.0
CSS0024453 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 4.0e-24 116.7 76 71.1
Haze_03193 Corylus avellana HOM05D000309 ORTHO05D000008 3.7e-22 110.2 60 81.7
CSS0028199 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 2.0e-20 104.4 75 64.0
arahy.Tifrunner.gnm1.ann1.2RNN62 Arachis hypogaea HOM05D000368 ORTHO05D000289 6.0e-20 102.8 66 71.2
Sopen01g034450 Solanum pennellii HOM05D003957 ORTHO05D030633 3.0e-19 100.5 153 39.9
Gohir.D13G107450 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.1e-18 98.6 86 58.1
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 5.6e-18 96.3 153 38.6
Gorai.009G400700 Gossypium raimondii HOM05D003957 ORTHO05D004833 9.5e-18 95.5 80 60.0
Lalb_Chr01g0000371 Lupinus albus HOM05D003957 ORTHO05D004833 9.5e-18 95.5 53 77.4
Gorai.007G239900 Gossypium raimondii HOM05D003957 ORTHO05D004833 1.2e-17 95.1 82 58.5
vmacro21188 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 6.2e-17 92.8 86 53.5
Cfa010780 Carpinus fangiana HOM05D003957 ORTHO05D004833 8.1e-17 92.4 53 77.4
Gohir.D04G098500 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.4e-16 91.7 55 76.4
CSS0008275 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.8e-16 91.3 58 72.4
RcHm_v2.0_Chr1g0316481 Rosa chinensis HOM05D003957 ORTHO05D037444 3.1e-16 90.5 75 49.3
Prupe.2G015100 Prunus persica HOM05D002736 ORTHO05D003882 5.2e-16 89.7 59 69.5
BolC6t39673H Brassica oleracea HOM05D003957 ORTHO05D004833 2.6e-15 87.4 69 62.3
Cfa010787 Carpinus fangiana HOM05D003957 ORTHO05D004833 2.6e-15 87.4 68 67.6
Ah.00g001340 Amaranthus hybridus HOM05D003957 ORTHO05D004833 7.5e-15 85.9 49 79.6
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 6.4e-14 82.8 146 35.6
Solyc01g087370.2 Solanum lycopersicum HOM05D003531 ORTHO05D030633 1.4e-13 81.6 146 35.6
Cre09.g387319 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D005503 4.6e-12 76.6 259 29.0
Sopen01g034430 Solanum pennellii HOM05D003957 ORTHO05D030633 6.8e-08 62.8 86 38.4
Cre10.g423400 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D044199 1.5e-07 61.6 186 25.8
THA.LOC104819242 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 4.4e-07 60.1 304 22.7
MCO11G882 Micromonas commoda HOM05D004284 ORTHO05D044199 1.3e-06 58.5 208 25.5


User provided reference genes

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