Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s3669 Capsella rubella HOM05D001573 ORTHO05D026805 2.2e-64 248.8 125 100.0
AT5G39230 Arabidopsis thaliana HOM05D001573 ORTHO05D026805 4.7e-43 177.9 123 78.0
AL7G51230 Arabidopsis lyrata HOM05D001573 ORTHO05D026805 1.1e-39 166.8 119 73.9
CARHR263180 Cardamine hirsuta HOM05D001573 ORTHO05D026805 2.1e-14 82.8 65 60.0
C02p55580 Brassica napus HOM05D001573 ORTHO05D001660 2.2e-08 62.8 112 38.4
BolC2t11614H Brassica oleracea HOM05D001573 ORTHO05D001660 2.2e-08 62.8 112 38.4
BcaC03g17577 Brassica carinata HOM05D001573 ORTHO05D001660 2.9e-08 62.4 112 38.4
BcaC03g17578 Brassica carinata HOM05D001573 ORTHO05D001660 2.9e-08 62.4 112 38.4
A02p36600 Brassica napus HOM05D001573 ORTHO05D001660 2.9e-08 62.4 112 37.5
BraA02t08655Z Brassica rapa HOM05D001573 ORTHO05D001660 2.9e-08 62.4 112 37.5
BcaC04g23841 Brassica carinata HOM05D001573 ORTHO05D001660 3.7e-08 62.0 36 69.4
A09p04040 Brassica napus HOM05D001573 ORTHO05D001660 3.7e-08 62.0 36 69.4
BolC9t53357H Brassica oleracea HOM05D001573 ORTHO05D001660 3.7e-08 62.0 36 69.4
BraA09t36040Z Brassica rapa HOM05D001573 ORTHO05D001660 3.7e-08 62.0 36 69.4
BcaB04g19510 Brassica carinata HOM05D001573 ORTHO05D001660 8.3e-08 60.8 36 66.7
BraA06t24907Z Brassica rapa HOM05D001573 ORTHO05D001660 1.4e-07 60.1 35 68.6
AL5G19480 Arabidopsis lyrata HOM05D001573 ORTHO05D001660 1.9e-07 59.7 78 43.6
AL5G19560 Arabidopsis lyrata HOM05D001573 ORTHO05D001660 1.9e-07 59.7 78 43.6
BcaB07g30080 Brassica carinata HOM05D001573 ORTHO05D001660 2.4e-07 59.3 80 42.5
Carub.0005s0811 Capsella rubella HOM05D001573 ORTHO05D001660 3.2e-07 58.9 78 42.3
Mapoly2273s0001 Marchantia polymorpha HOM05D001573 ORTHO05D001660 3.2e-07 58.9 41 61.0
BcaC06g30862 Brassica carinata HOM05D001573 ORTHO05D001660 4.1e-07 58.5 109 39.4
BcaC06g30864 Brassica carinata HOM05D001573 ORTHO05D001660 4.1e-07 58.5 109 39.4
BcaC06g33692 Brassica carinata HOM05D001573 ORTHO05D001660 4.1e-07 58.5 109 39.4
A06p18230 Brassica napus HOM05D001573 ORTHO05D001660 4.1e-07 58.5 127 33.9
Lj1g0015649 Lotus japonicus HOM05D001573 ORTHO05D001660 4.1e-07 58.5 36 61.1
AT3G29380 Arabidopsis thaliana HOM05D001573 ORTHO05D001660 5.4e-07 58.2 38 63.2
Sp2g17970 Schrenkiella parvula HOM05D001573 ORTHO05D001660 5.4e-07 58.2 96 39.6
C07p38260 Brassica napus HOM05D001573 ORTHO05D001660 9.2e-07 57.4 109 39.4
C09p04250 Brassica napus HOM05D001573 ORTHO05D001660 9.2e-07 57.4 124 32.3
BolC7t44348H Brassica oleracea HOM05D001573 ORTHO05D001660 9.2e-07 57.4 109 39.4
A06p39890 Brassica napus HOM05D001573 ORTHO05D001660 1.2e-06 57.0 109 39.4
BraA06t26903Z Brassica rapa HOM05D001573 ORTHO05D001660 1.2e-06 57.0 109 39.4
AL4G39730 Arabidopsis lyrata HOM05D001573 ORTHO05D001660 1.6e-06 56.6 109 32.1
AT2G41630 Arabidopsis thaliana HOM05D001573 ORTHO05D001660 1.6e-06 56.6 109 32.1
Ah.04g151540 Amaranthus hybridus HOM05D001573 ORTHO05D001660 2.1e-06 56.2 73 38.4
MD09G1065600 Malus domestica HOM05D001573 ORTHO05D001660 2.1e-06 56.2 47 53.2
Phvul.001G130000 Phaseolus vulgaris HOM05D001573 ORTHO05D001660 2.7e-06 55.8 78 35.9
EL10Ac8g19948 Beta vulgaris HOM05D001573 ORTHO05D001660 3.5e-06 55.5 38 57.9
Carub.0004s2388 Capsella rubella HOM05D001573 ORTHO05D001660 3.5e-06 55.5 109 32.1
CARHR136720 Cardamine hirsuta HOM05D001573 ORTHO05D001660 3.5e-06 55.5 109 32.1
ECA248G0012 Erigeron canadensis HOM05D001573 ORTHO05D001660 3.5e-06 55.5 87 41.4
HanXRQChr13g0396441 Helianthus annuus HOM05D001573 ORTHO05D001660 3.5e-06 55.5 87 41.4
Lsat_1_v5_gn_5_162080 Lactuca sativa HOM05D001573 ORTHO05D001660 3.5e-06 55.5 87 41.4
Mapoly0052s0001 Marchantia polymorpha HOM05D001573 ORTHO05D001660 3.5e-06 55.5 41 58.5
Ah.13g076530 Amaranthus hybridus HOM05D001573 ORTHO05D001660 4.6e-06 55.1 87 37.9
EL10Ac3g07112 Beta vulgaris HOM05D001573 ORTHO05D001660 4.6e-06 55.1 87 37.9
AUR62024476 Chenopodium quinoa HOM05D001573 ORTHO05D001660 4.6e-06 55.1 87 37.9
AUR62026065 Chenopodium quinoa HOM05D001573 ORTHO05D001660 4.6e-06 55.1 87 37.9
COL.COLO4_02773 Corchorus olitorius HOM05D001573 ORTHO05D001660 4.6e-06 55.1 39 51.3
COL.COLO4_07019 Corchorus olitorius HOM05D001573 ORTHO05D001660 4.6e-06 55.1 39 51.3
COL.COLO4_10355 Corchorus olitorius HOM05D001573 ORTHO05D001660 4.6e-06 55.1 39 51.3
Lsat_1_v5_gn_8_81600 Lactuca sativa HOM05D001573 ORTHO05D001660 4.6e-06 55.1 87 40.2
MD09G1065500 Malus domestica HOM05D001573 ORTHO05D001660 4.6e-06 55.1 47 53.2
Potri.006G048400 Populus trichocarpa HOM05D001573 ORTHO05D001660 4.6e-06 55.1 73 39.7
VMungo1383G1281 Vigna mungo HOM05D001573 ORTHO05D001660 4.6e-06 55.1 78 35.9
GSVIVG01029415001 Vitis vinifera HOM05D001573 ORTHO05D001660 4.6e-06 55.1 73 38.4
GSVIVG01033246001 Vitis vinifera HOM05D001573 ORTHO05D001660 4.6e-06 55.1 73 38.4
Cpa.g.sc182.4 Carica papaya HOM05D001573 ORTHO05D001660 6.0e-06 54.7 73 38.4
Ca_27319_v3 Cicer arietinum L. HOM05D001573 ORTHO05D001660 6.0e-06 54.7 73 37.0
Lsat_1_v5_gn_9_30840 Lactuca sativa HOM05D001573 ORTHO05D001660 6.0e-06 54.7 87 40.2
Phvul.007G251400 Phaseolus vulgaris HOM05D001573 ORTHO05D001660 6.0e-06 54.7 33 60.6
Psat6g113400 Pisum sativum HOM05D001573 ORTHO05D001660 6.0e-06 54.7 73 37.0
TPR.G19655 Trifolium pratense HOM05D001573 ORTHO05D001660 6.0e-06 54.7 73 37.0
VMungo0720G0356 Vigna mungo HOM05D001573 ORTHO05D001660 6.0e-06 54.7 33 60.6
AUR62000150 Chenopodium quinoa HOM05D001573 ORTHO05D001660 7.8e-06 54.3 73 37.0
DCAR_003261 Daucus carota HOM05D001573 ORTHO05D001660 7.8e-06 54.3 73 38.4
ECA236G3885 Erigeron canadensis HOM05D001573 ORTHO05D001660 7.8e-06 54.3 87 41.4
Eucgr.A02331 Eucalyptus grandis HOM05D001573 ORTHO05D001660 7.8e-06 54.3 87 37.9
HanXRQChr10g0283361 Helianthus annuus HOM05D001573 ORTHO05D001660 7.8e-06 54.3 87 40.2
Lj2A386G76 Lonicera japonica HOM05D001573 ORTHO05D001660 7.8e-06 54.3 73 38.4
PSO017G1640 Papaver somniferum HOM05D001573 ORTHO05D001660 7.8e-06 54.3 38 57.9
PSO017G6238 Papaver somniferum HOM05D001573 ORTHO05D001660 7.8e-06 54.3 38 57.9
Prupe.3G255700 Prunus persica HOM05D001573 ORTHO05D001660 7.8e-06 54.3 33 63.6
PGR004G1049 Punica granatum HOM05D001573 ORTHO05D001660 7.8e-06 54.3 87 39.1
Hund19142 Selenicereus undatus HOM05D001573 ORTHO05D001660 7.8e-06 54.3 87 37.9


User provided reference genes

Program Settings