Gene: AT5G39230

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G39230
  • Transcript Identifier AT5G39230.1
  • Gene Type Coding gene
  • Location Chr5 : 15709474-15709925 : positive

Gene Family Information

  • ID HOM05D001573
  • #Genes/#Species 406/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G39230.1
  • uniprot Q3E7U7

Descriptions

  • Description TFIIB zinc-binding protein
  • Computational description TFIIB zinc-binding protein; FUNCTIONS IN: transcription regulator activity, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription, transcription initiation; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Zinc finger, TFIIB-type (InterPro:IPR013137); BEST Arabidopsis thaliana protein match is: Cyclin-like family protein (TAIR:AT3G29380.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070897
ISO
PLAZA Homology (enrichment)transcription preinitiation complex assembly HOM05D001573
GO:0006352
ISO
PLAZA Homology (enrichment)DNA-templated transcription, initiation HOM05D001573

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0017025
ISO
PLAZA Homology (enrichment)TBP-class protein binding HOM05D001573

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013137 Zinc finger, TFIIB-type
Mapman id Description
35.1 not assigned.annotated