Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1527.7 756 100.0
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1451.4 756 94.6
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1450.3 756 95.0
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1402.5 757 90.5
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1400.2 758 90.8
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1391.3 757 90.0
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1388.6 757 89.6
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1388.2 757 89.3
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1383.2 757 89.0
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1379.0 758 88.8
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1379.0 758 88.9
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1377.1 758 88.8
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1376.7 757 88.8
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1376.7 757 88.8
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1376.3 757 88.6
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1372.1 757 88.6
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1370.5 758 88.5
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1357.4 759 88.0
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1328.5 761 85.7
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1273.8 768 80.5
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1214.1 767 77.8
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1211.4 765 78.0
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1206.8 765 76.7
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1206.0 767 76.9
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1204.5 765 76.9
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1203.0 767 76.9
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1201.0 767 76.8
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1199.5 767 76.8
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1199.1 767 76.9
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1198.3 762 76.9
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1198.3 766 75.6
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1197.2 765 77.0
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1197.2 770 76.5
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1194.1 764 76.4
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1193.3 768 75.4
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1191.8 765 76.9
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1191.0 766 75.5
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1190.3 769 76.5
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1190.3 765 75.8
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1189.5 765 75.9
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1187.2 766 76.4
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1186.0 776 75.1
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1186.0 765 75.8
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1185.6 767 75.1
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1183.7 768 76.3
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1182.9 766 74.9
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1182.9 766 76.1
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1182.5 760 76.7
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1181.0 763 75.6
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1177.5 765 75.2
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1176.8 762 74.9
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1176.8 767 74.6
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1176.4 764 75.1
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1176.4 770 74.9
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1174.8 761 76.3
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1173.7 770 74.7
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1173.3 765 75.3
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1172.1 770 74.3
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1169.1 764 75.0
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1168.3 765 75.2
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1166.8 770 74.3
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1166.4 764 74.3
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1165.6 764 74.5
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1164.8 765 74.4
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1164.8 765 74.4
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1160.2 770 73.4
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1158.3 762 74.7
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1154.8 763 74.0
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1153.3 760 74.6
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1152.9 766 73.5
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1149.8 765 75.4
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1146.3 759 75.6
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1140.2 761 72.5
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1139.4 757 72.9
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1133.6 777 72.1
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1129.8 769 72.6
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1127.5 770 72.3
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1126.3 841 67.2
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1123.2 766 71.7
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1118.6 758 72.3
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1118.2 766 71.8
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1117.8 767 71.8
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1112.8 787 71.3
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1111.7 760 71.3
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1110.5 766 71.3
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1108.6 759 71.4
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1108.6 763 70.8
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1105.9 902 63.3
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1105.5 763 70.5
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1096.3 763 69.9
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1094.3 762 70.6
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1092.8 764 71.3
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1090.9 764 69.5
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1089.3 828 66.1
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1085.5 762 68.5
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1084.7 763 68.8
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1084.7 764 69.0
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1083.9 763 69.2
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1078.9 819 65.6
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 2.1e-311 1072.0 767 69.0
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 2.6e-311 1071.6 759 69.4
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 1.3e-308 1062.8 777 68.1
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 2.9e-305 1051.6 760 68.6
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 7.9e-303 1043.5 917 60.1
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 2.4e-299 1031.9 733 69.6
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 4.1e-299 1031.2 770 67.5
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 6.3e-292 1007.3 921 59.0
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 3.4e-290 1001.5 770 64.8
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 7.2e-288 993.8 761 65.0
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.2e-287 993.0 774 63.8
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 7.9e-287 990.3 812 63.8
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 8.5e-273 943.7 763 62.6
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 1.2e-271 939.9 759 61.3
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 1.5e-248 863.2 761 59.3
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 2.6e-245 852.4 564 73.6
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.0e-209 734.2 739 54.8
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.5e-181 640.6 381 80.1
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 3.7e-175 619.4 808 43.9
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 2.4e-150 537.0 786 40.6
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 8.3e-135 485.3 806 38.0
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 7.8e-133 478.8 898 34.4
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.3e-131 473.4 759 39.7
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 1.0e-116 425.2 407 56.3
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.9e-94 351.3 344 57.8
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 1.9e-91 341.3 275 60.7
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 1.5e-88 331.6 237 72.6
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 9.3e-86 322.4 203 72.9
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 2.9e-71 274.2 198 67.2
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.1e-65 255.8 173 75.7
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 4.5e-48 197.2 302 41.4
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.3e-47 195.7 141 73.8
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 8.8e-44 183.0 185 58.4
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 6.3e-34 150.2 133 53.4
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 5.9e-32 143.7 263 39.2
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 7.7e-32 143.3 103 65.0
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 2.9e-31 141.4 104 61.5
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 6.1e-29 133.7 175 45.7
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.4e-28 132.5 190 43.7
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.0e-28 131.3 94 72.3
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 6.8e-28 130.2 113 52.2
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 8.8e-28 129.8 80 81.2
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 1.7e-26 125.6 118 56.8
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 2.2e-26 125.2 120 57.5
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 8.6e-23 113.2 114 53.5
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.9e-22 112.1 257 30.7
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 6.1e-21 107.1 175 38.9
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 6.8e-20 103.6 69 72.5
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.3e-18 99.4 50 86.0
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.0e-15 89.7 49 81.6
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.0e-15 88.2 43 88.4
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 6.6e-15 87.0 73 63.0
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 2.3e-12 78.6 136 44.1
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.3e-12 78.6 57 68.4
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 1.2e-11 76.3 60 51.7
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 4.4e-11 74.3 455 22.0
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 3.7e-10 71.2 68 55.9
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 4.9e-10 70.9 57 63.2
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 1.3e-07 62.8 286 23.1
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.1e-06 59.7 68 50.0
BcaC02g07664 Brassica carinata HOM05D001091 ORTHO05D001020 1.9e-06 58.9 356 22.2
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 2.5e-06 58.5 57 56.1
BolC4t27959H Brassica oleracea HOM05D001091 ORTHO05D001020 3.3e-06 58.2 338 22.8
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 4.3e-06 57.8 57 56.1
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 4.3e-06 57.8 57 56.1
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 5.6e-06 57.4 36 72.2
C04p64820 Brassica napus HOM05D001091 ORTHO05D001020 7.3e-06 57.0 338 22.8
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 9.5e-06 56.6 57 54.4


User provided reference genes

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