Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 3.0e-210 735.7 653 100.0
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 3.4e-185 652.5 650 93.8
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 7.3e-180 634.8 649 92.1
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 3.4e-177 625.9 650 92.5
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 4.7e-171 605.5 648 91.8
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 3.9e-157 559.3 658 85.0
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 1.5e-148 530.8 651 87.3
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 9.6e-148 528.1 651 86.9
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 2.8e-147 526.6 651 86.9
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 5.3e-146 522.3 647 86.6
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 1.3e-144 517.7 651 86.2
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 1.3e-144 517.7 651 86.2
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 2.7e-126 456.8 637 80.5
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 1.7e-120 437.6 274 88.7
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 3.2e-90 337.0 634 73.0
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 1.0e-88 332.0 655 69.9
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 1.0e-88 332.0 643 71.2
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 3.9e-88 330.1 602 74.4
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 1.1e-87 328.6 643 70.9
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 1.9e-87 327.8 655 69.0
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 4.3e-87 326.6 592 74.7
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 7.3e-87 325.9 590 75.4
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 7.3e-87 325.9 637 70.0
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 9.5e-87 325.5 643 71.4
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 1.6e-86 324.7 614 72.3
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.6e-86 324.7 642 71.3
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 2.8e-86 323.9 642 71.3
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 8.0e-86 322.4 646 71.2
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 6.8e-85 319.3 635 71.7
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 6.8e-85 319.3 635 70.9
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 8.9e-85 318.9 637 71.6
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 1.2e-84 318.5 623 70.9
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 1.2e-84 318.5 664 68.5
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 4.4e-84 316.6 631 70.2
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 5.8e-84 316.2 639 70.7
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 1.3e-83 315.1 634 70.5
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 2.2e-83 314.3 640 69.2
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 6.4e-83 312.8 563 76.7
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 6.4e-83 312.8 631 69.4
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 1.1e-82 312.0 640 69.7
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 1.1e-82 312.0 637 71.1
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 5.4e-82 309.7 543 79.0
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 5.4e-82 309.7 650 68.8
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 7.0e-82 309.3 641 70.0
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 6.0e-81 306.2 663 68.5
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 1.3e-80 305.1 617 71.8
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 3.9e-80 303.5 597 72.7
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 6.6e-80 302.8 606 71.9
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 6.6e-80 302.8 569 74.9
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 1.9e-79 301.2 615 71.5
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 2.5e-79 300.8 582 74.7
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 3.3e-79 300.4 590 73.1
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 4.3e-79 300.1 556 74.8
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 4.3e-79 300.1 679 65.7
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 5.6e-79 299.7 646 68.7
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 7.3e-79 299.3 646 68.4
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 1.6e-78 298.1 662 66.6
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 2.1e-78 297.7 622 70.1
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 1.4e-77 295.0 641 67.4
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 2.3e-77 294.3 628 69.1
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 3.1e-77 293.9 578 73.7
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 4.0e-77 293.5 677 66.3
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 4.0e-77 293.5 531 78.3
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 4.0e-77 293.5 629 68.2
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.0e-77 293.5 673 66.0
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 5.2e-77 293.1 573 64.2
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 5.2e-77 293.1 679 64.9
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 8.9e-77 292.4 665 67.4
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 8.9e-77 292.4 645 67.0
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 8.9e-77 292.4 637 67.8
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 2.0e-76 291.2 629 68.0
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 2.6e-76 290.8 569 73.6
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 5.8e-76 289.7 557 73.8
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 2.2e-75 287.7 629 68.2
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 8.3e-75 285.8 521 77.9
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 8.3e-75 285.8 521 77.9
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 8.3e-75 285.8 702 50.4
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 3.2e-74 283.9 521 77.7
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 5.4e-74 283.1 667 66.9
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 1.2e-73 282.0 539 76.4
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 1.6e-73 281.6 678 66.5
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 2.7e-73 280.8 679 66.7
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 4.6e-73 280.0 598 70.4
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 2.3e-72 277.7 525 76.4
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 3.0e-72 277.3 538 74.3
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 3.6e-70 270.4 607 69.4
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 1.4e-69 268.5 540 38.9
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 2.0e-68 264.6 695 41.3
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 4.4e-68 263.5 645 56.4
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 4.1e-66 256.9 538 74.2
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 9.2e-66 255.8 271 54.2
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 1.9e-63 248.1 668 64.4
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 9.6e-63 245.7 609 62.4
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 4.9e-59 233.4 237 56.1
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 8.4e-59 232.6 230 56.5
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 3.9e-56 223.8 223 54.3
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 3.6e-54 217.2 632 59.5
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 6.0e-49 199.9 158 60.1
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 7.3e-47 193.0 471 76.6
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 3.1e-37 161.0 223 43.9
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 2.0e-36 158.3 110 64.5
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 5.8e-36 156.8 176 67.6
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 1.2e-33 149.1 110 65.5
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 4.3e-31 140.6 115 57.4
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 5.3e-29 133.7 110 60.9
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.2e-28 132.5 80 81.2
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.3e-27 129.0 80 78.8
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.2e-27 128.3 125 56.0
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 2.9e-27 127.9 194 47.9
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 2.9e-27 127.9 231 34.6
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.9e-26 125.2 171 46.8
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 1.1e-18 99.4 120 44.2
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 2.5e-18 98.2 123 43.1
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 4.8e-14 84.0 94 53.2
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 2.6e-12 78.2 112 36.6
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 1.3e-11 75.9 201 32.3
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 2.5e-10 71.6 71 85.9


User provided reference genes

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