Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 8.5e-79 297.4 200 100.0
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 7.5e-59 231.1 206 78.6
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.2e-55 219.5 206 80.6
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-54 217.2 199 79.4
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-54 217.2 199 79.4
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.9e-54 216.5 155 73.5
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 9.4e-54 214.2 199 78.4
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.2e-53 213.8 164 73.2
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 6.1e-53 211.5 167 83.2
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.0e-52 210.7 168 80.4
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 1.8e-52 209.9 154 83.8
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 4.0e-52 208.8 154 84.4
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 2.6e-51 206.1 167 82.0
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 2.6e-51 206.1 167 82.0
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 2.6e-51 206.1 154 80.5
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 2.6e-51 206.1 167 82.0
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 5.7e-51 204.9 160 83.1
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 4.8e-50 201.8 148 81.1
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.8e-50 201.8 154 79.9
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.4e-49 199.5 154 77.9
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 7.0e-49 198.0 166 74.7
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 7.0e-49 198.0 164 68.9
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 9.1e-49 197.6 154 77.9
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 2.0e-48 196.4 156 72.4
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 2.7e-48 196.1 159 78.6
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.5e-48 195.7 211 62.6
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.5e-48 195.7 166 74.1
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 3.5e-48 195.7 157 80.9
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 3.5e-48 195.7 159 73.0
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 7.7e-48 194.5 223 62.3
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 7.7e-48 194.5 203 67.5
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 7.7e-48 194.5 168 65.5
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.0e-47 194.1 166 71.1
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.0e-47 194.1 166 71.1
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.0e-47 194.1 153 78.4
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 1.3e-47 193.7 207 67.1
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.7e-47 193.4 167 65.9
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.3e-47 193.0 159 78.6
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.3e-47 193.0 159 78.6
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 3.8e-47 192.2 148 81.1
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 3.8e-47 192.2 152 75.0
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.8e-47 192.2 155 74.2
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 3.8e-47 192.2 106 84.9
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 5.0e-47 191.8 200 69.5
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.0e-47 191.8 159 78.6
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.0e-47 191.8 155 71.6
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 5.0e-47 191.8 154 80.5
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 5.0e-47 191.8 168 64.3
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 5.0e-47 191.8 168 64.3
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 6.5e-47 191.4 226 59.3
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.1e-46 190.7 154 77.3
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.5e-46 190.3 155 81.3
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.5e-46 190.3 106 84.0
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.9e-46 189.9 207 71.5
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.9e-46 189.9 166 69.9
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.9e-46 189.9 155 76.1
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 3.3e-46 189.1 154 77.3
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.3e-46 189.1 155 74.8
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 4.2e-46 188.7 156 79.5
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 4.2e-46 188.7 154 68.8
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 5.5e-46 188.3 208 59.6
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 5.5e-46 188.3 154 74.7
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 7.2e-46 188.0 151 77.5
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 7.2e-46 188.0 203 65.5
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 9.5e-46 187.6 154 79.9
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 9.5e-46 187.6 154 77.3
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 9.5e-46 187.6 158 70.3
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.2e-45 187.2 154 76.6
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.2e-45 187.2 205 69.8
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.6e-45 186.8 206 65.0
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.6e-45 186.8 169 63.9
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.6e-45 186.8 169 63.9
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 1.6e-45 186.8 167 64.1
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 2.1e-45 186.4 213 72.3
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.1e-45 186.4 148 80.4
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.1e-45 186.4 148 80.4
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 2.1e-45 186.4 152 78.3
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 2.8e-45 186.0 154 77.3
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 2.8e-45 186.0 143 80.4
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 2.8e-45 186.0 166 71.7
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 2.8e-45 186.0 153 76.5
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 3.6e-45 185.7 105 82.9
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 3.6e-45 185.7 105 82.9
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 3.6e-45 185.7 162 66.0
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 6.1e-45 184.9 150 79.3
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 6.1e-45 184.9 148 75.0
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 8.0e-45 184.5 146 76.7
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 8.0e-45 184.5 148 79.7
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 8.0e-45 184.5 162 66.0
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 8.0e-45 184.5 152 77.6
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 1.0e-44 184.1 156 72.4
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.0e-44 184.1 155 77.4
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 1.0e-44 184.1 155 68.4
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 1.8e-44 183.3 155 74.2
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 1.8e-44 183.3 154 74.0
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 1.8e-44 183.3 198 63.6
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 2.3e-44 183.0 206 64.6
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.3e-44 183.0 107 81.3
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.3e-44 183.0 159 69.8
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 2.3e-44 183.0 153 77.1
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 3.0e-44 182.6 158 74.7
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 3.0e-44 182.6 148 77.7
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 4.0e-44 182.2 155 77.4
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 4.0e-44 182.2 170 63.5
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 5.2e-44 181.8 154 76.0
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 5.2e-44 181.8 152 77.0
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 5.2e-44 181.8 155 71.6
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 6.8e-44 181.4 155 75.5
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 8.9e-44 181.0 156 73.1
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.2e-43 180.6 148 78.4
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 1.2e-43 180.6 156 77.6
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 1.5e-43 180.3 146 77.4
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.5e-43 180.3 150 74.0
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 1.5e-43 180.3 164 67.1
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 1.5e-43 180.3 154 72.1
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.6e-43 179.5 148 77.7
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.6e-43 179.5 148 77.7
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 2.6e-43 179.5 156 73.1
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.6e-43 179.5 164 75.6
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 3.4e-43 179.1 147 74.1
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 4.4e-43 178.7 146 79.5
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 4.4e-43 178.7 157 75.2
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 4.4e-43 178.7 156 71.8
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 7.5e-43 177.9 197 70.6
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.3e-42 177.2 154 74.7
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 1.7e-42 176.8 152 73.7
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 2.2e-42 176.4 162 73.5
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 2.8e-42 176.0 152 77.0
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 8.3e-42 174.5 198 64.6
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.1e-41 174.1 149 77.2
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 1.4e-41 173.7 145 78.6
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 1.8e-41 173.3 154 68.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 1.8e-41 173.3 148 74.3
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 4.1e-41 172.2 91 87.9
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.2e-40 170.6 161 70.2
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.2e-40 170.6 164 68.3
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.2e-40 170.6 240 61.2
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.5e-40 168.7 89 88.8
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 5.9e-40 168.3 146 76.7
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 5.9e-40 168.3 146 76.7
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 1.0e-39 167.5 162 58.6
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 3.8e-39 165.6 140 77.1
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 3.8e-39 165.6 166 60.2
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 3.3e-38 162.5 90 84.4
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 3.3e-38 162.5 97 77.3
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 1.6e-37 160.2 163 66.9
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.6e-37 160.2 163 58.3
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 6.8e-36 154.8 159 66.7
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.3e-34 150.6 79 87.3
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 3.5e-32 142.5 138 63.0
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 4.6e-32 142.1 107 65.4
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 6.6e-31 138.3 125 60.8
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-30 137.5 77 80.5
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 8.3e-26 121.3 98 65.3
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 3.2e-25 119.4 76 68.4
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 1.5e-22 110.5 114 50.0
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 1.9e-22 110.2 107 58.9
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 5.6e-22 108.6 91 60.4
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.1e-21 106.7 57 89.5
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 1.1e-17 94.4 145 49.7
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.4e-17 93.2 50 78.0
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 7.3e-14 81.6 112 50.0
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 7.3e-14 81.6 107 51.4
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-11 73.9 46 78.3
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 3.2e-09 66.2 80 52.5
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 3.2e-09 66.2 80 52.5
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 9.2e-09 64.7 80 51.2
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 2.7e-08 63.2 80 51.2
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 2.7e-08 63.2 80 51.2
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 2.7e-08 63.2 80 51.2
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 3.9e-07 59.3 154 44.2
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 8.7e-07 58.2 38 68.4


User provided reference genes

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