Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 3.2e-212 741.5 371 100.0
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 1.3e-186 656.4 373 88.5
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 6.8e-183 644.0 374 87.7
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 3.4e-182 641.7 407 82.1
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 1.8e-175 619.4 380 84.2
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 1.3e-173 613.2 379 83.9
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 3.8e-165 585.1 375 82.1
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 7.9e-163 577.4 377 78.0
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 3.3e-161 572.0 367 81.5
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 9.0e-159 563.9 363 81.3
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 3.8e-157 558.5 365 79.5
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 6.5e-157 557.8 365 79.2
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 6.3e-152 541.2 324 84.3
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 1.4e-151 540.0 324 84.0
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 1.5e-150 536.6 324 83.6
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 7.4e-145 517.7 362 75.4
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 9.7e-137 490.7 372 67.2
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 4.8e-136 488.4 377 66.6
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 4.1e-135 485.3 372 68.0
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.5e-134 483.4 358 68.7
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 2.6e-134 482.6 377 65.8
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 2.6e-134 482.6 364 68.1
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 3.4e-134 482.3 358 68.7
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 1.3e-133 480.3 380 66.1
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 5.0e-133 478.4 374 66.0
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 1.4e-132 476.9 327 73.7
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 3.2e-132 475.7 379 66.0
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 4.2e-132 475.3 374 66.8
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 2.1e-131 473.0 361 67.3
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 2.7e-131 472.6 377 65.5
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 2.7e-131 472.6 359 67.1
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 7.9e-131 471.1 376 67.0
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 1.0e-130 470.7 372 65.3
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 2.3e-130 469.5 372 64.2
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 3.9e-130 468.8 376 65.7
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 3.9e-130 468.8 358 67.6
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 3.9e-130 468.8 360 66.4
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 2.6e-129 466.1 371 66.0
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 3.3e-129 465.7 377 64.5
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 5.7e-129 464.9 374 63.4
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 2.2e-128 463.0 361 67.3
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 2.8e-128 462.6 377 65.3
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 3.7e-128 462.2 364 66.2
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 4.8e-128 461.8 371 65.0
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 4.8e-128 461.8 369 62.9
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 6.3e-128 461.5 378 62.4
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 1.8e-127 459.9 371 64.4
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 1.8e-127 459.9 422 60.2
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 1.8e-127 459.9 360 65.6
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 2.4e-127 459.5 381 64.3
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 4.1e-127 458.8 374 64.7
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 4.1e-127 458.8 377 63.4
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 4.1e-127 458.8 377 63.4
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 5.3e-127 458.4 384 64.3
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 9.1e-127 457.6 353 68.3
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 1.2e-126 457.2 367 63.8
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 3.5e-126 455.7 327 68.8
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 3.5e-126 455.7 379 63.6
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 5.9e-126 454.9 344 66.6
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 5.9e-126 454.9 374 64.4
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 7.7e-126 454.5 401 60.6
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 4.2e-124 448.7 375 64.0
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 1.2e-123 447.2 372 63.2
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 2.1e-123 446.4 389 62.0
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 2.1e-123 446.4 389 62.0
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 3.6e-123 445.7 322 66.8
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.0e-122 444.1 407 58.2
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 1.4e-122 443.7 344 65.1
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 1.5e-121 440.3 343 66.2
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 2.0e-121 439.9 375 62.9
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 2.6e-121 439.5 365 62.5
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 5.7e-121 438.3 385 62.1
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 7.5e-121 438.0 361 64.3
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 7.5e-121 438.0 364 64.6
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 2.2e-120 436.4 371 62.0
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 3.7e-120 435.6 480 51.9
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 1.1e-119 434.1 327 67.9
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 1.1e-119 434.1 387 62.0
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 2.4e-119 433.0 361 64.3
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 4.5e-118 428.7 320 66.6
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 7.7e-118 427.9 320 66.6
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 7.7e-118 427.9 327 66.7
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 1.0e-117 427.6 327 65.4
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 2.9e-117 426.0 327 65.4
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 3.2e-116 422.5 360 61.9
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 3.2e-116 422.5 321 67.3
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 5.5e-116 421.8 355 60.8
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 9.4e-116 421.0 421 54.9
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 9.4e-116 421.0 333 63.4
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 1.6e-115 420.2 359 61.3
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 1.6e-115 420.2 359 61.3
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 7.5e-113 411.4 371 59.0
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 1.0e-106 391.0 330 62.4
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 1.6e-102 377.1 320 62.8
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 8.6e-101 371.3 319 58.0
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 1.0e-98 364.4 318 61.6
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 4.6e-94 349.0 364 53.3
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 1.6e-91 340.5 221 75.1
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 3.1e-90 336.3 318 54.4
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 8.9e-90 334.7 259 65.3
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 3.0e-85 319.7 370 51.1
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 6.6e-85 318.5 274 61.7
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 2.0e-81 307.0 281 58.0
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 4.1e-79 299.3 452 41.6
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 3.4e-73 279.6 180 71.7
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 1.1e-63 248.1 188 65.4
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 4.5e-57 226.1 195 61.0
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 8.4e-56 221.9 161 70.2
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 9.6e-52 208.4 374 38.0
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 1.3e-45 188.0 224 49.6
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 6.7e-45 185.7 139 69.8
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 5.0e-32 142.9 79 82.3
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 9.3e-31 138.7 136 55.1
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 2.4e-18 97.4 329 25.8
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 3.1e-18 97.1 322 26.7
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 5.3e-18 96.3 329 28.0
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 9.1e-18 95.5 354 26.6
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 7.2e-15 85.9 333 27.9
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 7.2e-15 85.9 326 28.2
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 7.2e-15 85.9 325 27.4
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 9.4e-15 85.5 174 33.3
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 2.1e-14 84.3 328 27.4
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 2.1e-14 84.3 339 26.5
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 3.6e-14 83.6 322 26.1
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 4.7e-14 83.2 319 28.5
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 6.1e-14 82.8 331 25.7
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 6.1e-14 82.8 324 28.4
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 1.0e-13 82.0 324 26.2
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 1.0e-13 82.0 321 28.3
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 3.0e-13 80.5 177 31.6
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 3.0e-13 80.5 203 29.6
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 3.0e-13 80.5 200 28.5
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 8.8e-13 79.0 336 25.9
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 1.1e-12 78.6 323 26.3
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 1.5e-12 78.2 322 25.5
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 1.5e-12 78.2 323 28.2
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 2.6e-12 77.4 176 30.7
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 4.4e-12 76.6 324 25.6
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 5.7e-12 76.3 325 25.2
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 5.7e-12 76.3 324 27.5
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 5.7e-12 76.3 326 26.1
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 5.7e-12 76.3 179 30.2
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 7.4e-12 75.9 363 25.9
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 9.7e-12 75.5 325 24.6
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 1.3e-11 75.1 176 28.4
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 1.3e-11 75.1 181 29.3
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 1.3e-11 75.1 328 25.3
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 2.2e-11 74.3 321 26.8
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 2.8e-11 73.9 52 69.2
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 1.1e-10 72.0 176 28.4
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 1.1e-10 72.0 326 24.5
Sc19g0002530 Simmondsia chinensis HOM05D006708 ORTHO05D008321 1.4e-10 71.6 190 30.0
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 5.3e-10 69.7 337 25.8
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 2.0e-09 67.8 324 25.9
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 1.3e-08 65.1 307 27.0
Sed0006346 Sechium edule HOM05D006708 ORTHO05D008321 2.5e-07 60.8 280 25.4
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 3.2e-07 60.5 74 40.5
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 7.2e-07 59.3 305 25.9
arahy.Tifrunner.gnm1.ann1.3U6NKV Arachis hypogaea HOM05D005655 ORTHO05D007386 1.6e-06 58.2 338 23.4
PRCOL_00002295 Prasinoderma coloniale HOM05D006708 ORTHO05D008321 1.6e-06 58.2 152 30.3


User provided reference genes

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