Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0430 Capsella rubella HOM05D006124 ORTHO05D007854 7.4e-250 866.7 422 100.0
AT1G05055 Arabidopsis thaliana HOM05D006124 ORTHO05D007854 1.0e-238 829.7 422 95.3
AL1G14800 Arabidopsis lyrata HOM05D006124 ORTHO05D007854 5.0e-238 827.4 422 95.0
CARHR004500 Cardamine hirsuta HOM05D006124 ORTHO05D007854 2.7e-236 821.6 423 94.3
Thhalv10007730m.g Eutrema salsugineum HOM05D006124 ORTHO05D007854 6.7e-235 817.0 422 93.1
Sp1g03920 Schrenkiella parvula HOM05D006124 ORTHO05D007854 5.3e-232 807.4 424 92.2
A08p36590 Brassica napus HOM05D006124 ORTHO05D007854 6.9e-232 807.0 423 92.2
BraA08t35561Z Brassica rapa HOM05D006124 ORTHO05D007854 6.9e-232 807.0 423 92.2
BcaB03g13459 Brassica carinata HOM05D006124 ORTHO05D007854 9.1e-232 806.6 423 92.2
C08p01730 Brassica napus HOM05D006124 ORTHO05D007854 7.7e-231 803.5 423 91.7
BolC8t46973H Brassica oleracea HOM05D006124 ORTHO05D007854 7.7e-231 803.5 423 91.7
Aa31LG1G19730 Aethionema arabicum HOM05D006124 ORTHO05D007854 2.8e-217 758.4 422 87.4
THA.LOC104801004 Tarenaya hassleriana HOM05D006124 ORTHO05D007854 5.5e-213 744.2 424 84.7
Cpa.g.sc139.77 Carica papaya HOM05D006124 ORTHO05D007854 6.1e-196 687.6 423 78.0
Hma1.2p1_0002F.1_g001970 Hydrangea macrophylla HOM05D006124 ORTHO05D007854 8.6e-190 667.2 401 78.1
Duzib150G0641 Durio zibethinus HOM05D006124 ORTHO05D007854 1.1e-189 666.8 397 79.8
QL01p023235 Quercus lobata HOM05D006124 ORTHO05D007854 1.9e-189 666.0 418 76.1
Thecc.09G259100 Theobroma cacao HOM05D006124 ORTHO05D007854 3.6e-188 661.8 390 80.0
vmacro03179 Vaccinium macrocarpon HOM05D006124 ORTHO05D007854 3.6e-188 661.8 399 76.9
Actinidia07118 Actinidia chinensis HOM05D006124 ORTHO05D007854 6.8e-187 657.5 399 77.2
CSS0017090 Camellia sinensis var. sinensis HOM05D006124 ORTHO05D007854 6.8e-187 657.5 406 77.1
Haze_08019 Corylus avellana HOM05D006124 ORTHO05D007854 6.8e-187 657.5 430 74.4
Cfa012640 Carpinus fangiana HOM05D006124 ORTHO05D007854 1.5e-186 656.4 423 74.2
TWI39G0794 Tripterygium wilfordii HOM05D006124 ORTHO05D007854 2.0e-186 656.0 412 76.2
Ciclev10005033m.g Citrus clementina HOM05D006124 ORTHO05D007854 2.6e-186 655.6 418 75.8
Gohir.D09G102900 Gossypium hirsutum HOM05D006124 ORTHO05D007854 2.6e-186 655.6 407 76.9
Rhsim08G0043400 Rhododendron simsii HOM05D006124 ORTHO05D007854 2.6e-186 655.6 400 77.2
RcHm_v2.0_Chr5g0060301 Rosa chinensis HOM05D006124 ORTHO05D007854 4.4e-186 654.8 415 75.9
Atru.chr3.3681 Acer truncatum HOM05D006124 ORTHO05D007854 5.8e-186 654.4 408 77.7
COL.COLO4_05187 Corchorus olitorius HOM05D006124 ORTHO05D007854 5.8e-186 654.4 393 79.4
Dinv30520 Davidia involucrata HOM05D006124 ORTHO05D007854 9.8e-186 653.7 394 78.4
FAN21G3497 Fragaria x ananassa HOM05D006124 ORTHO05D007854 9.8e-186 653.7 415 75.2
GSVIVG01025154001 Vitis vinifera HOM05D006124 ORTHO05D007854 9.8e-186 653.7 401 76.6
Glyma.19G129000 Glycine max HOM05D006124 ORTHO05D007854 3.7e-185 651.7 418 74.2
Ciclev10011800m.g Citrus clementina HOM05D006124 ORTHO05D007854 8.3e-185 650.6 419 75.4
MELO3C005421.2 Cucumis melo HOM05D006124 ORTHO05D007854 1.9e-184 649.4 422 73.7
Eucgr.J00945 Eucalyptus grandis HOM05D006124 ORTHO05D007854 1.9e-184 649.4 424 75.2
FvH4_3g32970 Fragaria vesca HOM05D006124 ORTHO05D007854 1.9e-184 649.4 415 74.7
Lsat_1_v5_gn_6_46340 Lactuca sativa HOM05D006124 ORTHO05D007854 1.9e-184 649.4 392 77.8
FAN25G1144 Fragaria x ananassa HOM05D006124 ORTHO05D007854 2.4e-184 649.0 415 74.7
FAN11G0357 Fragaria x ananassa HOM05D006124 ORTHO05D007854 4.1e-184 648.3 415 74.5
MD03G1112800 Malus domestica HOM05D006124 ORTHO05D007854 4.1e-184 648.3 422 73.9
Gohir.A09G106200 Gossypium hirsutum HOM05D006124 ORTHO05D007854 5.4e-184 647.9 407 76.7
Gorai.006G120700 Gossypium raimondii HOM05D006124 ORTHO05D007854 5.4e-184 647.9 407 76.7
Lalb_Chr22g0357551 Lupinus albus HOM05D006124 ORTHO05D007854 7.0e-184 647.5 410 74.6
Lj1g0025688 Lotus japonicus HOM05D006124 ORTHO05D007854 2.0e-183 646.0 412 74.8
Manes.04G024500 Manihot esculenta HOM05D006124 ORTHO05D007854 2.0e-183 646.0 409 76.5
HanXRQChr02g0055911 Helianthus annuus HOM05D006124 ORTHO05D007854 2.7e-183 645.6 423 74.0
CsaV3_5G005370 Cucumis sativus L. HOM05D006124 ORTHO05D007854 3.5e-183 645.2 416 74.0
PSO541G0641 Papaver somniferum HOM05D006124 ORTHO05D007854 3.5e-183 645.2 424 72.6
ClCG01G004970 Citrullus lanatus HOM05D006124 ORTHO05D007854 1.3e-182 643.3 417 74.3
Nitab4.5_0000214g0090 Nicotiana tabacum HOM05D006124 ORTHO05D007854 1.3e-182 643.3 422 73.7
Ca_08379_v3 Cicer arietinum L. HOM05D006124 ORTHO05D007854 1.7e-182 642.9 408 74.5
TPR.G16093 Trifolium pratense HOM05D006124 ORTHO05D007854 1.7e-182 642.9 412 74.3
CANSAT54G1697 Cannabis sativa HOM05D006124 ORTHO05D007854 5.0e-182 641.3 424 73.3
Glyma.11G073900 Glycine max HOM05D006124 ORTHO05D007854 5.0e-182 641.3 418 72.7
PSO384G4530 Papaver somniferum HOM05D006124 ORTHO05D007854 8.6e-182 640.6 407 74.4
Lalb_Chr14g0365721 Lupinus albus HOM05D006124 ORTHO05D007854 1.1e-181 640.2 411 74.2
Medtr7g089440 Medicago truncatula HOM05D006124 ORTHO05D007854 3.3e-181 638.6 421 72.7
arahy.Tifrunner.gnm1.ann1.63AZS3 Arachis hypogaea HOM05D006124 ORTHO05D007854 4.3e-181 638.3 420 72.9
PSO339G3674 Papaver somniferum HOM05D006124 ORTHO05D007854 5.6e-181 637.9 407 74.2
VMungo1383G3228 Vigna mungo HOM05D006124 ORTHO05D007854 5.6e-181 637.9 418 72.7
arahy.Tifrunner.gnm1.ann1.M1WJK6 Arachis hypogaea HOM05D006124 ORTHO05D007854 1.2e-180 636.7 420 72.9
Sed0018571 Sechium edule HOM05D006124 ORTHO05D007854 1.6e-180 636.3 421 73.2
Cc01_g01430 Coffea canephora HOM05D006124 ORTHO05D007854 2.8e-180 635.6 401 75.8
Sabra04G0071700 Salix brachista HOM05D006124 ORTHO05D007854 3.6e-180 635.2 394 77.4
Prupe.6G097100 Prunus persica HOM05D006124 ORTHO05D007854 4.7e-180 634.8 416 74.3
MBI18_g17017_MAGBIO Magnolia biondii HOM05D006124 ORTHO05D007854 8.1e-180 634.0 396 74.5
Potri.004G113700 Populus trichocarpa HOM05D006124 ORTHO05D007854 8.1e-180 634.0 405 76.0
Solyc04g054700.3 Solanum lycopersicum HOM05D006124 ORTHO05D007854 8.1e-180 634.0 422 72.5
Aqoxy5G00340 Aquilegia oxysepala HOM05D006124 ORTHO05D007854 1.4e-179 633.3 412 74.5
Migut.D02195 Erythranthe guttata HOM05D006124 ORTHO05D007854 1.4e-179 633.3 416 72.1
EL10Ac5g12347 Beta vulgaris HOM05D006124 ORTHO05D007854 5.2e-179 631.3 414 71.5
Peaxi162Scf00876g00022 Petunia axillaris HOM05D006124 ORTHO05D007854 6.8e-179 630.9 422 72.7
Peaxi162Scf00272g00827 Petunia axillaris HOM05D006124 ORTHO05D007854 2.0e-178 629.4 422 72.7
CAN.G219.5 Capsicum annuum HOM05D006124 ORTHO05D007854 5.8e-178 627.9 422 72.0
ECA233G1948 Erigeron canadensis HOM05D006124 ORTHO05D007854 3.7e-177 625.2 386 75.9
MSTRG.21138 Avicennia marina HOM05D006124 ORTHO05D007854 3.2e-176 622.1 398 74.1
Nn7g36111 Nelumbo nucifera HOM05D006124 ORTHO05D007854 3.2e-176 622.1 388 75.5
Nitab4.5_0004386g0010 Nicotiana tabacum HOM05D006124 ORTHO05D007854 5.4e-176 621.3 420 72.4
CiPaw.05G171100 Carya illinoinensis HOM05D006124 ORTHO05D007854 2.1e-175 619.4 397 74.1
SGA_v2.0_scaffold61G21160 Striga asiatica HOM05D006124 ORTHO05D007854 1.5e-173 613.2 419 69.5
unitig_21.g20322 Utricularia gibba HOM05D006124 ORTHO05D007854 2.1e-167 592.8 429 66.0
Zm00001eb077790 Zea mays HOM05D006124 ORTHO05D007854 1.2e-164 583.6 395 71.6
Os04g0508900 Oryza sativa ssp. japonica HOM05D006124 ORTHO05D007854 2.8e-164 582.4 385 71.4
CiPaw.13G108300 Carya illinoinensis HOM05D006124 ORTHO05D007854 2.6e-162 575.9 348 78.2
AUR62018404 Chenopodium quinoa HOM05D006124 ORTHO05D007854 4.2e-160 568.5 357 75.1
AUR62021039 Chenopodium quinoa HOM05D006124 ORTHO05D007854 5.4e-160 568.2 348 76.1
DCAR_015555 Daucus carota HOM05D006124 ORTHO05D007854 7.1e-160 567.8 371 74.9
SEGI_32950 Sequoiadendron giganteum HOM05D006124 ORTHO05D007854 7.1e-160 567.8 412 65.0
PGR119G0371 Punica granatum HOM05D006124 ORTHO05D007854 1.1e-157 560.5 366 73.8
SalBow3G1513 Salvia bowleyana HOM05D006124 ORTHO05D007854 4.0e-155 552.0 363 74.1
Oeu035057.1 Olea europaea HOM05D006124 ORTHO05D007854 4.9e-153 545.0 379 72.0
Ah.13g077240 Amaranthus hybridus HOM05D006124 ORTHO05D007854 6.7e-150 534.6 323 75.9
Mapoly0005s0033 Marchantia polymorpha HOM05D006124 ORTHO05D007854 2.1e-148 529.6 404 61.6
Pp3c24_6530 Physcomitrium patens HOM05D006124 ORTHO05D007854 3.7e-148 528.9 396 61.4
Sopen04g024450 Solanum pennellii HOM05D006124 ORTHO05D007854 3.1e-147 525.8 325 75.1
Sc06g0010480 Simmondsia chinensis HOM05D006124 ORTHO05D007854 6.9e-147 524.6 320 75.9
CBR_g21234 Chara braunii HOM05D006124 ORTHO05D007854 1.7e-145 520.0 407 60.4
TAR369G0666 Trochodendron aralioides HOM05D006124 ORTHO05D007854 3.2e-144 515.8 336 72.6
CDE04G2680 Ceratophyllum demersum HOM05D006124 ORTHO05D007854 3.5e-143 512.3 351 70.7
Phvul.001G121400 Phaseolus vulgaris HOM05D006124 ORTHO05D007854 7.4e-141 504.6 314 74.5
SMO141G0040 Selaginella moellendorffii HOM05D006124 ORTHO05D007854 2.8e-140 502.7 396 58.1
MD11G1132000 Malus domestica HOM05D006124 ORTHO05D007854 4.8e-140 501.9 327 72.5
Peaxi162Scf00106g02220 Petunia axillaris HOM05D006124 ORTHO05D007854 3.2e-136 489.2 406 62.6
ATR0580G285 Amborella trichopoda HOM05D006124 ORTHO05D007854 3.3e-133 479.2 313 70.0
Lj1C682G4 Lonicera japonica HOM05D006124 ORTHO05D007854 3.8e-129 465.7 283 78.4
Peaxi162Scf00876g00023 Petunia axillaris HOM05D006124 ORTHO05D007854 9.4e-120 434.5 288 73.3
BolC5t29103H Brassica oleracea HOM05D006124 ORTHO05D007854 1.0e-118 431.0 318 69.2
Psat3g079640 Pisum sativum HOM05D006124 ORTHO05D007854 1.5e-117 427.2 266 75.6
Cre03.g179550 Chlamydomonas reinhardtii HOM05D006124 ORTHO05D007854 2.7e-103 379.8 431 46.2
AagrBONN_evm.TU.Sc2ySwM_344.4431 Anthoceros agrestis HOM05D006124 ORTHO05D007854 1.3e-100 370.9 270 60.4
MCO11G183 Micromonas commoda HOM05D006124 ORTHO05D007854 1.7e-97 360.5 424 44.3
PGSC0003DMG401027913 Solanum tuberosum HOM05D006124 ORTHO05D007854 4.0e-94 349.4 247 71.3
CAN.G1136.1 Capsicum annuum HOM05D006124 ORTHO05D007854 2.2e-92 343.6 235 70.2
Haze_26481 Corylus avellana HOM05D006124 ORTHO05D007854 1.9e-80 303.9 412 40.3
Solyc08g028693.1 Solanum lycopersicum HOM05D006124 ORTHO05D007854 5.6e-80 302.4 199 71.4
PRCOL_00001395 Prasinoderma coloniale HOM05D006124 ORTHO05D007854 2.4e-67 260.4 357 39.2
Cfa026643 Carpinus fangiana HOM05D006124 ORTHO05D007854 3.2e-67 260.0 434 35.0
Lj1A187G25 Lonicera japonica HOM05D006124 ORTHO05D007854 5.1e-57 226.1 325 40.0
BcaC09g51580 Brassica carinata HOM05D006124 ORTHO05D007854 2.6e-37 160.6 93 90.3
HPP92_015146 Vanilla planifolia HOM05D006124 ORTHO05D007854 3.2e-27 127.1 80 68.8
Psat6g235520 Pisum sativum HOM05D006124 ORTHO05D001516 3.7e-23 113.6 74 68.9
Peaxi162Scf00876g00016 Petunia axillaris HOM05D006124 ORTHO05D007854 1.3e-20 105.1 92 62.0
Lj1A682T15 Lonicera japonica HOM05D006124 ORTHO05D007854 4.6e-18 96.7 54 72.2
ECA247G2464 Erigeron canadensis HOM05D011992 ORTHO05D008321 1.8e-14 84.7 88 50.0
ClCG03G002310 Citrullus lanatus HOM05D006124 ORTHO05D150439 1.4e-11 75.1 135 35.6
RcHm_v2.0_Chr5g0060231 Rosa chinensis HOM05D006124 ORTHO05D007854 6.1e-10 69.7 61 54.1
HPP92_015147 Vanilla planifolia HOM05D006124 ORTHO05D007854 6.1e-10 69.7 54 66.7
ECA233G1860 Erigeron canadensis HOM05D000013 ORTHO05D000011 1.1e-06 58.9 105 37.1


User provided reference genes

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