Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 1.7e-155 552.7 308 100.0
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 9.7e-50 201.4 184 51.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.0e-46 191.4 183 49.7
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 2.0e-42 177.2 187 46.5
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 6.8e-11 72.4 137 36.5
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 2.9e-09 67.0 137 32.1
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 8.3e-09 65.5 96 39.6
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 8.3e-09 65.5 96 40.6
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.1e-08 65.1 143 32.9
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.1e-08 65.1 135 35.6
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.1e-08 65.1 114 37.7
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.1e-08 65.1 96 40.6
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.1e-08 65.1 97 41.2
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.4e-08 64.7 96 40.6
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 1.4e-08 64.7 117 36.8
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.4e-08 64.7 97 40.2
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.9e-08 64.3 100 41.0
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.9e-08 64.3 110 35.5
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.4e-08 63.9 96 39.6
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 2.4e-08 63.9 97 41.2
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 2.4e-08 63.9 109 38.5
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 2.4e-08 63.9 96 40.6
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 3.2e-08 63.5 106 38.7
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 3.2e-08 63.5 110 35.5
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 3.2e-08 63.5 106 37.7
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 4.1e-08 63.2 118 37.3
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 4.1e-08 63.2 97 39.2
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 4.1e-08 63.2 96 39.6
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 4.1e-08 63.2 101 37.6
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 5.4e-08 62.8 96 39.6
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 5.4e-08 62.8 96 38.5
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 5.4e-08 62.8 96 39.6
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 5.4e-08 62.8 133 34.6
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 5.4e-08 62.8 96 39.6
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 5.4e-08 62.8 114 36.8
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 7.1e-08 62.4 101 39.6
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 7.1e-08 62.4 101 37.6
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 7.1e-08 62.4 101 37.6
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 7.1e-08 62.4 96 39.6
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 7.1e-08 62.4 96 39.6
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 7.1e-08 62.4 100 39.0
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 9.2e-08 62.0 107 39.3
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 9.2e-08 62.0 96 38.5
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.2e-08 62.0 96 39.6
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.2e-08 62.0 96 39.6
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.2e-08 62.0 96 39.6
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 9.2e-08 62.0 107 39.3
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 9.2e-08 62.0 96 39.6
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 1.2e-07 61.6 96 39.6
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-07 61.6 107 39.3
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.2e-07 61.6 107 39.3
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-07 61.6 96 38.5
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.2e-07 61.6 96 38.5
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.2e-07 61.6 102 37.3
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.2e-07 61.6 102 37.3
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 1.2e-07 61.6 107 38.3
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.2e-07 61.6 100 38.0
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.6e-07 61.2 103 39.8
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.6e-07 61.2 101 37.6
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.6e-07 61.2 96 38.5
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.6e-07 61.2 96 38.5
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.6e-07 61.2 96 39.6
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-07 61.2 96 38.5
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-07 61.2 96 38.5
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-07 61.2 96 38.5
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.6e-07 61.2 96 38.5
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.6e-07 61.2 96 37.5
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.6e-07 61.2 100 38.0
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.6e-07 61.2 110 36.4
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.1e-07 60.8 96 37.5
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 2.1e-07 60.8 96 38.5
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 2.1e-07 60.8 96 38.5
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 2.1e-07 60.8 100 39.0
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 2.1e-07 60.8 137 32.1
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 2.1e-07 60.8 96 37.5
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 2.1e-07 60.8 96 38.5
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 2.1e-07 60.8 101 36.6
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.7e-07 60.5 101 38.6
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.7e-07 60.5 101 38.6
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 2.7e-07 60.5 101 35.6
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 2.7e-07 60.5 107 37.4
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.7e-07 60.5 107 38.3
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.7e-07 60.5 107 38.3
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 2.7e-07 60.5 96 37.5
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 2.7e-07 60.5 96 36.5
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.7e-07 60.5 101 37.6
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.7e-07 60.5 107 38.3
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.7e-07 60.5 107 37.4
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 2.7e-07 60.5 100 39.0
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 2.7e-07 60.5 100 38.0
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 2.7e-07 60.5 100 39.0
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 3.5e-07 60.1 107 37.4
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 3.5e-07 60.1 101 36.6
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 3.5e-07 60.1 101 36.6
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 3.5e-07 60.1 107 39.3
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.5e-07 60.1 101 38.6
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 3.5e-07 60.1 106 34.9
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 3.5e-07 60.1 96 39.6
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 4.6e-07 59.7 101 37.6
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 4.6e-07 59.7 107 37.4
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 4.6e-07 59.7 107 37.4
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 4.6e-07 59.7 107 37.4
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.6e-07 59.7 107 38.3
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 4.6e-07 59.7 96 38.5
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 4.6e-07 59.7 111 36.0
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 4.6e-07 59.7 96 38.5
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 4.6e-07 59.7 107 38.3
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.6e-07 59.7 96 37.5
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.6e-07 59.7 96 37.5
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 4.6e-07 59.7 107 36.4
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 4.6e-07 59.7 100 38.0
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 6.0e-07 59.3 146 29.5
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 7.8e-07 58.9 101 39.6
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 7.8e-07 58.9 102 35.3
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 7.8e-07 58.9 96 37.5
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 7.8e-07 58.9 120 35.0
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 7.8e-07 58.9 96 37.5
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.0e-06 58.5 96 37.5
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.0e-06 58.5 96 37.5
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.0e-06 58.5 96 37.5
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.0e-06 58.5 100 38.0
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.0e-06 58.5 93 37.6
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.0e-06 58.5 104 37.5
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.0e-06 58.5 100 38.0
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.3e-06 58.2 96 37.5
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.3e-06 58.2 109 36.7
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.7e-06 57.8 107 37.4
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.7e-06 57.8 98 36.7
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.7e-06 57.8 107 37.4
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.3e-06 57.4 103 35.9
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 2.3e-06 57.4 98 39.8
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.3e-06 57.4 98 39.8
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 2.3e-06 57.4 101 36.6
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.0e-06 57.0 107 37.4
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.0e-06 57.0 106 35.8
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 3.0e-06 57.0 101 36.6
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.9e-06 56.6 114 33.3
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.9e-06 56.6 101 35.6
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.9e-06 56.6 107 37.4
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.9e-06 56.6 98 37.8
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 3.9e-06 56.6 100 40.0
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 5.1e-06 56.2 42 66.7
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.6e-06 55.8 101 35.6
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 6.6e-06 55.8 107 36.4


User provided reference genes

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