Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27645_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 3.4e-83 311.6 156 100.0
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 3.0e-79 298.5 156 94.9
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 1.9e-78 295.8 156 93.6
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 8.9e-76 287.0 156 91.7
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 1.5e-75 286.2 155 91.0
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 2.0e-75 285.8 156 89.7
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 5.4e-73 277.7 156 87.2
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 1.2e-72 276.6 156 86.5
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 1.7e-71 272.7 156 85.3
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 6.9e-68 260.8 156 82.1
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 9.0e-68 260.4 156 82.1
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 2.6e-67 258.8 156 82.1
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 3.4e-67 258.5 156 80.8
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 4.4e-67 258.1 156 81.4
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 1.3e-66 256.5 156 80.8
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 2.9e-66 255.4 156 81.4
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 3.8e-66 255.0 156 80.1
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 3.8e-66 255.0 156 81.4
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 6.4e-66 254.2 155 81.3
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 1.1e-65 253.4 156 80.1
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 1.9e-65 252.7 156 80.1
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 1.9e-65 252.7 156 80.1
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 4.2e-65 251.5 156 78.8
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 4.2e-65 251.5 156 78.8
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 7.1e-65 250.8 156 79.5
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 1.6e-64 249.6 156 77.6
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 2.1e-64 249.2 154 79.9
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 4.6e-64 248.1 156 78.8
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 6.0e-64 247.7 156 77.6
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 6.0e-64 247.7 156 80.1
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 1.3e-63 246.5 156 80.1
Atru.chr1.753 Acer truncatum HOM05D004178 ORTHO05D005204 1.7e-63 246.1 154 79.9
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 1.7e-63 246.1 156 78.2
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 1.7e-63 246.1 156 77.6
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.3e-63 245.7 156 76.9
Hund11836 Selenicereus undatus HOM05D004178 ORTHO05D005204 2.3e-63 245.7 156 78.2
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 3.0e-63 245.4 156 78.2
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 3.9e-63 245.0 156 78.2
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 3.9e-63 245.0 156 76.9
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 5.1e-63 244.6 156 78.8
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 5.1e-63 244.6 156 76.9
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 6.6e-63 244.2 156 76.9
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 6.6e-63 244.2 156 76.9
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 6.6e-63 244.2 156 78.8
CAN.G515.10 Capsicum annuum HOM05D004178 ORTHO05D005204 8.7e-63 243.8 156 78.8
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 8.7e-63 243.8 156 78.8
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 8.7e-63 243.8 156 78.8
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 1.9e-62 242.7 152 81.6
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 1.9e-62 242.7 156 76.9
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 4.3e-62 241.5 154 77.3
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 5.6e-62 241.1 156 76.3
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 5.6e-62 241.1 156 75.0
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 1.3e-61 240.0 155 76.1
FAN10G1085 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.3e-61 240.0 162 74.7
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 2.1e-61 239.2 156 75.6
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 2.1e-61 239.2 155 75.5
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 2.8e-61 238.8 156 75.6
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 2.8e-61 238.8 156 75.6
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 2.8e-61 238.8 156 77.6
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 2.8e-61 238.8 156 75.6
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 6.2e-61 237.7 156 77.6
HPP92_022323 Vanilla planifolia HOM05D004178 ORTHO05D005204 8.1e-61 237.3 156 73.7
HPP92_022331 Vanilla planifolia HOM05D004178 ORTHO05D005204 8.1e-61 237.3 156 73.7
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 1.4e-60 236.5 156 74.4
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 1.4e-60 236.5 156 73.7
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 1.8e-60 236.1 156 74.4
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 2.4e-60 235.7 156 75.0
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 4.0e-60 235.0 156 74.4
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 4.0e-60 235.0 156 74.4
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 4.0e-60 235.0 156 74.4
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 6.9e-60 234.2 156 73.7
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 6.9e-60 234.2 156 73.7
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 9.0e-60 233.8 156 73.7
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 9.0e-60 233.8 156 73.7
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 1.5e-59 233.0 155 74.8
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 2.0e-59 232.6 156 73.1
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 2.0e-59 232.6 156 73.7
AL6G18010 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.7e-58 229.6 156 72.4
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 2.2e-58 229.2 155 72.9
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 4.9e-58 228.0 135 82.2
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.2e-57 225.3 156 73.7
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 1.6e-56 223.0 155 71.6
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 3.5e-56 221.9 154 72.7
SEGI_03190 Sequoiadendron giganteum HOM05D004178 ORTHO05D005204 6.0e-56 221.1 135 79.3
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 7.9e-56 220.7 156 71.8
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 3.9e-55 218.4 132 82.6
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 1.1e-54 216.9 135 79.3
FAN03G2333 Fragaria x ananassa HOM05D004178 ORTHO05D005204 4.3e-54 214.9 130 81.5
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 5.6e-54 214.5 153 69.9
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 9.6e-54 213.8 165 67.9
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 1.6e-53 213.0 156 67.9
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 1.6e-53 213.0 138 75.4
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 1.6e-53 213.0 146 69.2
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 2.8e-53 212.2 155 69.0
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 3.7e-53 211.8 152 69.7
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 1.1e-52 210.3 155 67.7
Oeu021707.2 Olea europaea HOM05D004178 ORTHO05D005204 1.1e-52 210.3 129 79.1
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 9.0e-52 207.2 155 67.1
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 2.1e-48 196.1 146 62.3
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 3.5e-48 195.3 135 74.1
Cpa.g.sc121.1 Carica papaya HOM05D004178 ORTHO05D005204 4.6e-48 194.9 117 80.3
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 8.7e-47 190.7 125 75.2
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 5.6e-46 188.0 156 62.8
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 1.3e-45 186.8 134 69.4
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 6.2e-45 184.5 184 55.4
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 4.0e-44 181.8 140 65.7
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 7.6e-43 177.6 112 76.8
CARHR205510 Cardamine hirsuta HOM05D004178 ORTHO05D005204 1.2e-40 170.2 110 74.5
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 1.2e-40 170.2 105 79.0
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 3.9e-39 165.2 156 57.7
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-38 163.7 148 52.0
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 8.5e-34 147.5 94 75.5
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 2.9e-26 122.5 134 47.8
GSVIVG01014044001 Vitis vinifera HOM05D004178 ORTHO05D005204 1.2e-24 117.1 72 80.6
PRCOL_00006025 Prasinoderma coloniale HOM05D004178 ORTHO05D005204 2.6e-22 109.4 146 38.4
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 3.7e-21 105.5 73 68.5
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 1.1e-17 94.0 155 36.1
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 1.4e-17 93.6 152 35.5
AUR62042656 Chenopodium quinoa HOM05D004178 ORTHO05D005204 3.9e-15 85.5 53 77.4
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 1.1e-12 77.4 47 78.7
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 4.1e-12 75.5 72 51.4
Cre12.g525100 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 4.5e-11 72.0 118 33.9
GSVIVG01014042001 Vitis vinifera HOM05D004178 ORTHO05D005204 5.5e-09 65.1 47 66.0
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 3.6e-08 62.4 138 26.8
Cre10.g440200 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 4.0e-07 58.9 112 33.0
DCAR_029700 Daucus carota HOM05D005087 ORTHO05D006427 4.0e-07 58.9 138 26.8
Actinidia21540 Actinidia chinensis HOM05D005087 ORTHO05D006427 5.2e-07 58.5 121 28.9
Medtr5g036330 Medicago truncatula HOM05D005087 ORTHO05D006427 5.2e-07 58.5 138 25.4
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 5.2e-07 58.5 121 30.6
BcaB01g05014 Brassica carinata HOM05D005087 ORTHO05D006427 8.8e-07 57.8 138 24.6
CANSAT80G0443 Cannabis sativa HOM05D005087 ORTHO05D006427 8.8e-07 57.8 121 28.9
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 8.8e-07 57.8 157 26.8
A03p07470 Brassica napus HOM05D005087 ORTHO05D006427 1.2e-06 57.4 138 24.6
C03p08670 Brassica napus HOM05D005087 ORTHO05D006427 1.2e-06 57.4 138 24.6
BolC3t13367H Brassica oleracea HOM05D005087 ORTHO05D006427 1.2e-06 57.4 138 24.6
BraA03t10076Z Brassica rapa HOM05D005087 ORTHO05D006427 1.2e-06 57.4 138 24.6
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 1.2e-06 57.4 138 25.4
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 1.5e-06 57.0 138 23.9
AT5G15920 Arabidopsis thaliana HOM05D005087 ORTHO05D006427 1.5e-06 57.0 138 23.9
Ca_14518_v3 Cicer arietinum L. HOM05D005087 ORTHO05D006427 1.5e-06 57.0 138 25.4
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 1.5e-06 57.0 134 26.9
Medtr3g033470 Medicago truncatula HOM05D005087 ORTHO05D006427 1.5e-06 57.0 138 25.4
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 2.0e-06 56.6 139 27.3
Cc02_g28540 Coffea canephora HOM05D005087 ORTHO05D006427 2.0e-06 56.6 121 28.9
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 2.0e-06 56.6 138 26.1
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 2.0e-06 56.6 134 28.4
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 2.0e-06 56.6 138 25.4
Hund09863 Selenicereus undatus HOM05D005087 ORTHO05D006427 2.0e-06 56.6 138 26.1
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 2.0e-06 56.6 130 26.2
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 2.6e-06 56.2 138 23.9
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 2.6e-06 56.2 121 28.1
FAN03G0563 Fragaria x ananassa HOM05D005087 ORTHO05D006427 2.6e-06 56.2 121 28.1
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 2.6e-06 56.2 121 28.1
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 2.6e-06 56.2 121 28.1
Os05g0596600 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 2.6e-06 56.2 138 25.4
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 2.6e-06 56.2 121 28.1
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 2.6e-06 56.2 138 25.4
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 3.3e-06 55.8 138 23.9
Ciclev10030582m.g Citrus clementina HOM05D005087 ORTHO05D006427 3.3e-06 55.8 130 26.2
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 3.3e-06 55.8 138 25.4
Cpa.g.sc125.40 Carica papaya HOM05D005087 ORTHO05D006427 4.4e-06 55.5 138 25.4
Duzib177G0717 Durio zibethinus HOM05D005087 ORTHO05D006427 4.4e-06 55.5 121 27.3
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 4.4e-06 55.5 139 25.2
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 4.4e-06 55.5 128 27.3
Medtr4g115050 Medicago truncatula HOM05D005087 ORTHO05D006427 4.4e-06 55.5 138 25.4
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 4.4e-06 55.5 138 25.4
Sp6g28190 Schrenkiella parvula HOM05D005087 ORTHO05D006427 4.4e-06 55.5 138 23.9
EL10Ac2g04365 Beta vulgaris HOM05D005087 ORTHO05D006427 5.7e-06 55.1 121 28.9
CiPaw.14G002700 Carya illinoinensis HOM05D005087 ORTHO05D006427 5.7e-06 55.1 117 27.4
Gohir.A13G157100 Gossypium hirsutum HOM05D005087 ORTHO05D006427 5.7e-06 55.1 121 26.4
Gohir.D13G161900 Gossypium hirsutum HOM05D005087 ORTHO05D006427 5.7e-06 55.1 121 26.4
Gorai.013G183900 Gossypium raimondii HOM05D005087 ORTHO05D006427 5.7e-06 55.1 121 26.4
Lj3g0015731 Lotus japonicus HOM05D005087 ORTHO05D006427 5.7e-06 55.1 138 24.6
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 5.7e-06 55.1 121 27.3
Nn7g36293 Nelumbo nucifera HOM05D005087 ORTHO05D006427 5.7e-06 55.1 138 24.6
Thecc.05G218700 Theobroma cacao HOM05D005087 ORTHO05D006427 5.7e-06 55.1 121 27.3
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 7.5e-06 54.7 138 24.6
CDE09G1121 Ceratophyllum demersum HOM05D005087 ORTHO05D006427 7.5e-06 54.7 138 25.4
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 7.5e-06 54.7 138 24.6
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 7.5e-06 54.7 138 24.6
Psat6g018320 Pisum sativum HOM05D005087 ORTHO05D006427 7.5e-06 54.7 138 25.4
THA.LOC104819098 Tarenaya hassleriana HOM05D005087 ORTHO05D006427 7.5e-06 54.7 138 23.2
CSS0029256 Camellia sinensis var. sinensis HOM05D005087 ORTHO05D006427 9.7e-06 54.3 121 28.1
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 9.7e-06 54.3 138 23.9
Sed0026614 Sechium edule HOM05D005087 ORTHO05D006427 9.7e-06 54.3 120 27.5
VMungo0251G2588 Vigna mungo HOM05D005087 ORTHO05D006427 9.7e-06 54.3 138 24.6


User provided reference genes

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