Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 7.3e-77 290.4 140 100.0
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 6.7e-30 134.4 106 67.9
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 2.5e-29 132.5 106 66.0
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 2.5e-29 132.5 106 66.0
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.3e-28 130.2 106 65.1
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.3e-28 130.2 106 65.1
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 2.1e-28 129.4 106 64.2
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 2.8e-28 129.0 111 60.4
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 3.6e-28 128.6 106 64.2
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.6e-28 128.6 106 65.1
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 6.2e-28 127.9 106 63.2
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.1e-27 127.1 106 64.2
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.8e-27 126.3 106 62.3
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.8e-27 126.3 106 63.2
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 4.0e-27 125.2 106 62.3
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 5.3e-27 124.8 106 62.3
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 9.0e-27 124.0 111 58.6
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 9.0e-27 124.0 125 57.6
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.2e-26 123.6 106 62.3
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 1.2e-26 123.6 106 63.2
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.2e-26 123.6 106 62.3
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.5e-26 123.2 107 60.7
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 2.6e-26 122.5 106 61.3
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.4e-26 122.1 106 61.3
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 3.4e-26 122.1 106 62.3
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 4.5e-26 121.7 106 60.4
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 4.5e-26 121.7 106 60.4
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 7.6e-26 120.9 106 60.4
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 9.9e-26 120.6 106 61.3
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 9.9e-26 120.6 106 60.4
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.3e-25 120.2 106 60.4
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.7e-25 119.8 106 58.5
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 2.9e-25 119.0 106 60.4
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 2.9e-25 119.0 106 60.4
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 4.9e-25 118.2 106 57.5
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 4.9e-25 118.2 106 59.4
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.4e-25 117.9 106 59.4
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 6.4e-25 117.9 106 59.4
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 8.4e-25 117.5 106 61.3
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 8.4e-25 117.5 106 59.4
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 8.4e-25 117.5 106 59.4
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.1e-24 117.1 106 58.5
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.9e-24 116.3 106 57.5
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.9e-24 116.3 106 59.4
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 2.4e-24 115.9 106 59.4
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 2.4e-24 115.9 106 58.5
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 3.2e-24 115.5 106 57.5
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 3.2e-24 115.5 106 58.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 3.2e-24 115.5 106 58.5
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 3.2e-24 115.5 132 49.2
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.2e-24 115.5 106 58.5
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 4.2e-24 115.2 106 56.6
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 4.2e-24 115.2 106 56.6
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 4.2e-24 115.2 106 56.6
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.2e-24 115.2 106 57.5
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 4.2e-24 115.2 106 57.5
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 5.5e-24 114.8 106 56.6
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 5.5e-24 114.8 106 57.5
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 7.1e-24 114.4 106 56.6
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 7.1e-24 114.4 106 56.6
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 9.3e-24 114.0 106 56.6
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 9.3e-24 114.0 106 56.6
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 2.1e-23 112.8 106 56.6
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 2.1e-23 112.8 106 58.5
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.1e-23 112.8 106 56.6
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 2.7e-23 112.5 106 57.5
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 2.7e-23 112.5 106 55.7
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 3.5e-23 112.1 106 58.5
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 3.5e-23 112.1 106 57.5
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 4.6e-23 111.7 106 55.7
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 4.6e-23 111.7 106 58.5
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 4.6e-23 111.7 106 54.7
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 4.6e-23 111.7 107 57.0
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 6.0e-23 111.3 106 56.6
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 6.0e-23 111.3 106 55.7
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.0e-22 110.5 106 54.7
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.0e-22 110.5 106 54.7
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.0e-22 110.5 106 54.7
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.0e-22 110.5 106 54.7
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.8e-22 109.8 106 54.7
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.3e-22 109.4 106 54.7
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.9e-22 108.6 106 54.7
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 5.1e-22 108.2 106 55.7
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 8.7e-22 107.5 106 53.8
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 8.7e-22 107.5 106 53.8
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 8.7e-22 107.5 106 51.9
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.1e-21 107.1 106 54.7
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.1e-21 107.1 106 51.9
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.5e-21 106.7 106 54.7
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.5e-21 106.7 106 53.8
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 2.5e-21 105.9 106 52.8
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.3e-21 105.5 106 50.9
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 4.3e-21 105.1 106 53.8
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.6e-20 103.2 106 52.8
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.6e-20 103.2 106 52.8
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.1e-20 102.8 105 53.3
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.7e-20 102.1 106 52.8
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.7e-20 102.1 57 78.9
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 1.8e-19 99.8 106 51.9
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 2.4e-19 99.4 106 48.1
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 6.9e-19 97.8 106 49.1
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 6.9e-19 97.8 112 50.9
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.2e-18 97.1 106 51.9
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.5e-18 96.7 106 48.1
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.5e-18 96.7 106 50.9
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 2.0e-18 96.3 106 50.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 2.6e-18 95.9 106 50.0
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 2.6e-18 95.9 106 50.0
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 2.6e-18 95.9 106 50.0
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.6e-18 95.9 106 49.1
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 2.6e-18 95.9 112 50.0
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 4.5e-18 95.1 106 50.9
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.8e-18 94.7 161 39.8
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.4e-16 90.1 131 43.5
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 2.7e-15 85.9 86 54.7
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.1e-13 80.5 106 38.7
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-13 80.5 45 80.0
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.9e-13 79.7 45 80.0
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.9e-13 79.7 45 80.0
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 3.3e-13 79.0 82 56.1
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 3.3e-13 79.0 106 38.7
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 9.6e-13 77.4 92 47.8
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 2.8e-12 75.9 82 53.7
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 5.9e-10 68.2 106 35.8
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.7e-09 66.6 67 47.8
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 2.2e-09 66.2 52 61.5
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 6.5e-09 64.7 40 67.5
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.1e-08 63.9 106 34.9
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.2e-07 60.5 31 83.9
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 6.1e-07 58.2 29 86.2
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.3e-06 57.0 30 86.7
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 3.9e-06 55.5 55 49.1


User provided reference genes

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