Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.1e-284 982.6 514 100.0
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.3e-256 889.4 518 91.5
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 4.5e-241 837.8 514 87.4
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.2e-238 829.7 516 86.8
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 3.0e-237 825.1 516 86.8
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 4.1e-234 814.7 514 85.6
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 8.5e-232 807.0 517 84.3
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.8e-227 792.0 527 82.2
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.8e-227 792.0 527 82.2
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.1e-226 790.0 514 84.4
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 7.9e-222 773.9 524 82.3
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 3.7e-219 765.0 449 82.6
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 2.2e-216 755.7 427 83.8
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 3.2e-215 751.9 427 83.8
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 9.4e-215 750.4 448 80.6
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 4.7e-214 748.0 441 81.0
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 5.2e-213 744.6 429 82.3
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 6.7e-213 744.2 449 80.2
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 6.7e-213 744.2 434 82.0
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 2.0e-212 742.7 425 81.4
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 4.4e-212 741.5 448 80.1
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 4.4e-212 741.5 446 80.3
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.3e-211 740.0 428 82.0
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 2.2e-211 739.2 428 83.4
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.2e-211 739.2 435 82.3
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 3.7e-211 738.4 427 82.0
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 4.8e-211 738.0 435 82.1
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 4.8e-211 738.0 427 83.4
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 6.3e-211 737.6 435 82.3
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 8.2e-211 737.3 441 80.0
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 1.4e-210 736.5 449 79.3
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.8e-210 736.1 426 82.9
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 7.0e-210 734.2 431 80.3
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.6e-209 733.0 426 81.0
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 2.6e-209 732.3 439 80.9
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 4.5e-209 731.5 438 80.4
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 4.5e-209 731.5 434 79.7
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 4.5e-209 731.5 461 77.2
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.0e-208 730.3 455 77.1
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 2.2e-208 729.2 422 82.5
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.9e-208 728.8 429 80.9
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 3.8e-208 728.4 525 77.0
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 6.5e-208 727.6 483 74.9
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 6.5e-208 727.6 420 82.1
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.1e-207 726.9 423 81.8
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 1.2e-206 723.4 434 79.7
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 2.1e-206 722.6 424 80.7
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 4.7e-206 721.5 456 77.0
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.0e-205 720.3 440 78.9
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 3.0e-205 718.8 423 80.6
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 5.7e-204 714.5 436 80.3
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 1.3e-203 713.4 444 77.5
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 5.9e-201 704.5 441 78.0
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.3e-200 703.4 421 80.5
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.3e-200 703.4 453 76.6
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 4.2e-199 698.4 434 78.8
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.6e-198 696.4 453 76.8
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 2.7e-198 695.7 451 74.5
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 8.0e-198 694.1 420 79.0
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 8.0e-198 694.1 439 77.9
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 7.5e-196 687.6 459 75.4
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.7e-195 686.4 490 69.6
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 6.3e-195 684.5 442 75.3
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 2.4e-194 682.6 432 77.8
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 9.1e-194 680.6 432 77.5
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 5.9e-193 677.9 434 75.6
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 3.8e-192 675.2 462 72.1
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 5.0e-192 674.9 418 77.5
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 3.3e-191 672.2 458 72.1
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.4e-189 666.8 454 72.9
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 5.2e-189 664.8 450 71.6
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 7.5e-188 661.0 435 73.3
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 9.8e-188 660.6 424 74.3
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.7e-187 659.8 392 79.8
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.7e-187 659.8 439 73.6
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 4.1e-186 655.2 420 74.3
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 2.0e-185 652.9 455 70.3
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 6.6e-184 647.9 456 70.2
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 3.3e-183 645.6 438 71.0
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 4.3e-183 645.2 458 69.4
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 6.1e-182 641.3 350 87.1
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 8.0e-182 641.0 446 70.0
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 1.8e-181 639.8 436 71.1
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.2e-180 637.1 436 70.9
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 4.4e-180 635.2 449 70.6
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 9.8e-180 634.0 424 72.6
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.3e-179 633.6 440 70.7
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 2.2e-179 632.9 435 71.0
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.4e-178 629.4 397 78.3
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 7.0e-178 627.9 457 68.9
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 3.9e-176 622.1 447 70.0
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 5.0e-176 621.7 425 71.8
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 8.6e-176 620.9 403 73.7
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 7.3e-175 617.8 378 77.8
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 9.5e-175 617.5 449 68.2
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 2.3e-173 612.8 401 73.8
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.3e-173 612.8 424 70.8
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 2.4e-170 602.8 315 90.8
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 9.2e-170 600.9 468 64.5
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.7e-166 588.6 449 67.3
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.4e-165 587.0 392 73.2
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.8e-165 586.6 446 65.0
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.3e-165 586.3 397 70.5
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 2.0e-164 583.2 377 75.6
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 4.4e-164 582.0 475 64.4
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.7e-161 572.8 430 64.7
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.6e-156 556.2 353 74.5
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.4e-154 550.4 306 82.7
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 3.8e-147 525.8 327 76.8
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 5.3e-141 505.4 341 73.0
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 5.5e-130 468.8 293 76.5
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.2e-129 467.6 313 73.8
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.6e-129 467.2 456 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 8.2e-126 454.9 436 54.4
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 1.1e-125 454.5 472 53.6
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 2.8e-118 429.9 362 58.8
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.0e-112 411.4 310 63.5
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 1.4e-112 411.0 334 62.0
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 4.1e-109 399.4 325 55.7
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 7.9e-105 385.2 218 80.7
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 2.6e-95 353.6 191 86.4
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 4.7e-89 332.8 433 45.7
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 1.7e-86 324.3 259 64.9
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 4.1e-85 319.7 233 69.1
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 7.8e-68 262.3 263 55.5
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 1.6e-60 238.0 259 68.7
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 1.4e-56 224.9 121 89.3
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 1.7e-46 191.4 112 83.9
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 5.4e-45 186.4 171 60.8
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 3.2e-37 160.6 109 73.4
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 3.1e-32 144.1 295 34.2
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.7e-30 138.3 77 80.5
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 2.4e-29 134.4 271 35.4
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.1e-26 125.6 79 75.9
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 5.8e-23 113.2 80 68.8
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 3.0e-19 100.9 210 34.3
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.6e-15 87.8 52 75.0
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 3.3e-10 70.9 89 51.7
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.8e-09 67.8 29 93.1
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 3.1e-08 64.3 28 96.4
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 5.9e-07 60.1 83 48.2
QL12p008547 Quercus lobata HOM05D005140 ORTHO05D006288 1.7e-06 58.5 130 63.8


User provided reference genes

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