Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 4.7e-123 444.5 220 100.0
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.1e-103 380.2 220 83.2
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 2.1e-102 375.9 220 82.3
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 4.6e-102 374.8 222 80.2
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.9e-101 371.7 216 81.9
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.4e-98 363.2 220 74.5
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.4e-98 363.2 215 81.9
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.3e-96 356.7 215 77.2
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 1.3e-96 356.7 215 77.2
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.3e-96 356.7 215 77.2
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.2e-94 350.1 220 77.3
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.7e-93 346.3 220 76.4
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 3.0e-93 345.5 220 75.5
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 4.0e-90 335.1 219 69.9
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 5.3e-90 334.7 215 72.6
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 9.0e-90 334.0 215 70.2
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.6e-89 332.4 215 70.2
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.4e-89 332.0 222 69.4
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 3.4e-89 332.0 222 70.3
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.9e-88 328.9 219 68.0
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 8.4e-88 327.4 219 68.0
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.1e-87 327.0 219 68.0
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.4e-87 326.6 225 68.9
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.9e-87 326.2 222 68.5
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.9e-87 326.2 202 76.2
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 2.4e-87 325.9 223 67.7
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 7.1e-87 324.3 215 68.8
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 7.1e-87 324.3 215 68.8
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 9.3e-87 323.9 215 67.9
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 9.3e-87 323.9 219 66.7
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.2e-86 323.6 220 69.1
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.6e-86 323.2 219 67.6
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.6e-86 323.2 220 66.8
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 2.7e-86 322.4 215 68.4
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 3.5e-86 322.0 211 67.3
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 7.9e-86 320.9 215 67.9
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.0e-85 320.5 218 66.1
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.8e-85 319.7 218 66.5
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 3.9e-85 318.5 220 65.9
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 8.7e-85 317.4 221 68.3
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.1e-84 317.0 218 66.5
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.1e-84 317.0 215 65.6
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.9e-84 316.2 218 66.5
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.5e-84 315.8 220 66.4
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 3.3e-84 315.5 216 66.7
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 4.3e-84 315.1 241 65.1
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 7.4e-84 314.3 215 64.7
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.7e-83 312.0 256 59.0
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.7e-83 312.0 256 59.0
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 4.8e-83 311.6 220 65.5
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 6.2e-83 311.2 215 65.1
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 8.1e-83 310.8 220 65.0
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.8e-82 309.7 214 66.4
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.8e-82 309.7 215 65.1
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 3.1e-82 308.9 218 65.1
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 4.0e-82 308.5 215 64.7
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 5.3e-82 308.1 250 61.6
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 9.0e-82 307.4 218 65.6
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.2e-81 307.0 219 64.8
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 4.5e-81 305.1 220 64.5
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 5.8e-81 304.7 215 65.1
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 7.6e-81 304.3 220 62.7
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.0e-80 303.9 219 67.6
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-80 303.9 216 64.8
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.2e-80 302.8 216 64.4
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.9e-80 302.4 216 64.4
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 3.8e-80 302.0 215 65.6
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 6.5e-80 301.2 220 61.8
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.1e-79 300.4 215 63.7
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.1e-79 300.4 221 63.8
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 4.2e-79 298.5 218 61.9
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 4.2e-79 298.5 215 62.8
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 4.2e-79 298.5 215 62.8
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 4.2e-79 298.5 221 62.4
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 9.3e-79 297.4 218 60.6
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 3.5e-78 295.4 215 61.9
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 6.0e-78 294.7 217 63.1
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 2.3e-77 292.7 215 61.4
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 3.0e-77 292.4 218 59.6
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 5.1e-77 291.6 215 60.5
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.7e-76 288.1 217 62.2
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 7.4e-76 287.7 210 62.9
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.3e-75 287.0 240 57.1
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.3e-75 287.0 215 60.0
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.7e-75 285.4 213 60.1
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.3e-75 284.6 193 65.8
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.1e-74 283.9 210 61.4
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.1e-74 283.9 244 58.2
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.4e-74 283.5 216 60.2
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 3.1e-74 282.3 217 59.0
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 4.1e-74 282.0 217 59.4
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-73 280.4 220 56.4
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.5e-73 280.0 257 53.3
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.0e-73 279.6 215 57.7
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-72 274.6 213 57.7
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.6e-70 270.0 220 57.7
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.0e-69 267.3 207 60.9
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.9e-69 265.4 215 54.4
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.9e-68 263.1 178 65.7
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 2.2e-67 259.6 225 52.9
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 3.1e-66 255.8 211 58.8
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 6.9e-66 254.6 219 52.5
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.0e-64 250.8 220 49.1
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.2e-64 249.6 215 53.5
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-64 248.1 215 52.1
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 8.5e-64 247.7 220 53.2
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.6e-62 243.4 169 71.0
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.1e-62 243.0 210 55.7
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 3.3e-60 235.7 211 54.5
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 5.3e-58 228.4 162 65.4
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 6.9e-58 228.0 211 47.4
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.0e-57 226.5 160 64.4
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.0e-57 226.5 160 64.4
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.6e-57 226.1 165 65.5
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.5e-56 221.1 215 49.8
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.1e-55 220.7 165 64.2
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 3.6e-54 215.7 213 43.7
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.6e-54 215.7 181 54.7
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 7.9e-54 214.5 141 67.4
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.0e-53 214.2 225 52.0
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.0e-53 212.6 221 47.5
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.0e-53 212.6 185 51.9
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 4.4e-52 208.8 185 57.3
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.7e-52 208.4 136 67.6
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-50 203.4 214 46.3
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.8e-50 203.4 188 50.5
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 7.0e-50 201.4 142 64.1
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.5e-47 193.7 165 55.8
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 7.2e-47 191.4 208 40.9
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.2e-46 190.7 187 47.1
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-46 190.7 159 55.3
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 4.7e-46 188.7 218 39.0
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 2.3e-45 186.4 171 52.0
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-42 176.8 143 53.1
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.0e-41 173.3 203 43.3
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.0e-41 173.3 149 57.7
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 8.0e-38 161.4 133 56.4
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.0e-38 161.4 165 49.1
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 1.4e-37 160.6 117 65.8
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 3.5e-33 146.0 128 60.2
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.0e-32 144.4 121 58.7
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.9e-32 142.9 120 56.7
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.5e-32 141.4 132 53.0
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 2.8e-30 136.3 170 42.4
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.0e-30 134.8 117 56.4
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.8e-29 131.7 132 48.5
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.3e-24 117.5 102 54.9
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 6.4e-19 98.6 90 53.3
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 5.4e-18 95.5 78 57.7
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 2.0e-17 93.6 132 37.9
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.0e-16 91.3 52 69.2
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 6.6e-16 88.6 82 56.1
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.6e-16 88.2 143 32.2
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.2e-14 84.3 52 65.4
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 2.8e-14 83.2 73 53.4
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-12 77.8 66 54.5
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 1.3e-11 74.3 165 27.9
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 6.4e-11 72.0 99 40.4
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 6.6e-08 62.0 53 64.2
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 8.6e-08 61.6 52 65.4
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 8.6e-08 61.6 52 65.4
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.3e-07 59.3 62 48.4


User provided reference genes

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