Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 8.1e-135 483.8 255 100.0
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 5.5e-115 417.9 255 83.9
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.1e-112 410.2 256 84.4
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 4.4e-104 381.7 252 78.6
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.8e-94 349.7 258 72.9
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 4.1e-94 348.6 223 79.8
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 3.5e-93 345.5 253 71.9
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.2e-90 337.0 257 70.0
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 2.1e-90 336.3 254 71.3
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 3.6e-90 335.5 227 74.0
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.0e-89 332.0 254 70.5
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 5.2e-89 331.6 259 70.3
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-88 330.5 192 83.9
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.5e-88 330.1 271 68.6
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 1.5e-88 330.1 189 84.1
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.5e-88 330.1 189 84.7
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 2.6e-88 329.3 263 66.9
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 2.6e-88 329.3 229 72.9
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 4.4e-88 328.6 252 69.4
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.7e-87 326.6 260 68.5
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.7e-87 326.6 260 68.5
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.2e-87 326.2 219 75.3
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 2.2e-87 326.2 245 67.3
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 2.8e-87 325.9 255 67.1
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 3.7e-87 325.5 259 66.8
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 3.7e-87 325.5 207 75.4
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 6.3e-87 324.7 186 83.3
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 6.3e-87 324.7 195 81.0
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.1e-86 323.9 233 71.2
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.4e-86 323.6 187 83.4
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.8e-86 323.2 257 68.1
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.4e-86 322.8 253 68.0
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 2.4e-86 322.8 256 67.2
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 9.1e-86 320.9 194 82.0
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.2e-85 320.5 257 66.1
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 2.0e-85 319.7 196 79.6
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 2.0e-85 319.7 182 84.6
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.7e-85 319.3 180 83.9
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.7e-85 319.3 256 68.4
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 2.7e-85 319.3 211 75.4
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 2.7e-85 319.3 257 65.4
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 4.5e-85 318.5 259 66.8
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 7.7e-85 317.8 207 74.9
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.7e-85 317.8 257 67.7
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 7.7e-85 317.8 255 65.9
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 7.7e-85 317.8 254 66.1
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.0e-84 317.4 260 63.8
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.7e-84 316.6 261 65.9
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 2.2e-84 316.2 184 82.1
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 2.2e-84 316.2 257 64.6
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 2.9e-84 315.8 222 71.6
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 2.9e-84 315.8 259 66.4
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 3.8e-84 315.5 259 66.0
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 3.8e-84 315.5 181 84.0
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.8e-84 315.5 262 65.3
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 5.0e-84 315.1 251 66.9
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 8.5e-84 314.3 188 79.8
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 8.5e-84 314.3 253 66.4
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 1.1e-83 313.9 251 66.9
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.5e-83 313.5 225 70.7
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.9e-83 313.2 243 67.5
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.9e-83 313.2 249 66.7
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.2e-83 312.4 223 68.6
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.2e-83 312.0 245 68.6
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 5.5e-83 311.6 250 64.8
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 5.5e-83 311.6 255 64.7
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.2e-83 311.2 251 64.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.1e-82 309.7 256 64.1
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 2.1e-82 309.7 253 65.2
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 2.7e-82 309.3 226 70.8
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 3.6e-82 308.9 223 71.3
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 6.1e-82 308.1 256 65.2
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 8.0e-82 307.8 254 65.0
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 8.0e-82 307.8 254 67.3
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.0e-81 307.4 226 69.0
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-81 306.6 228 68.9
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.0e-81 305.8 255 65.5
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 3.0e-81 305.8 247 66.8
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 3.0e-81 305.8 182 81.3
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 4.0e-81 305.4 255 65.5
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 4.0e-81 305.4 251 66.9
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 4.0e-81 305.4 256 63.3
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.0e-81 305.4 205 74.6
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 5.2e-81 305.1 216 72.2
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 6.8e-81 304.7 228 68.4
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.5e-80 303.5 245 65.7
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.5e-80 303.5 251 66.1
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.5e-80 303.5 260 63.8
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.0e-80 303.1 254 64.6
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 3.4e-80 302.4 201 73.6
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 9.8e-80 300.8 251 66.9
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.3e-79 300.4 260 63.5
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-79 300.1 225 69.3
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.4e-78 297.0 187 78.1
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.4e-78 297.0 244 63.9
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 7.0e-78 294.7 237 69.6
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 7.0e-78 294.7 216 69.9
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.5e-77 292.0 252 63.5
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.0e-76 290.8 220 67.3
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.3e-76 290.4 251 62.9
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 2.3e-76 289.7 198 73.2
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.9e-76 289.3 218 68.3
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 8.6e-76 287.7 167 81.4
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 4.2e-75 285.4 170 81.8
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.4e-73 280.4 214 66.4
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.3e-73 279.6 246 63.0
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 4.0e-73 278.9 180 74.4
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.5e-72 276.9 245 62.4
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.5e-72 276.9 186 73.1
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 5.7e-72 275.0 220 67.7
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 9.8e-72 274.2 178 74.7
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.3e-71 273.9 241 62.2
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.7e-71 273.5 190 69.5
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.7e-71 273.5 190 69.5
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 6.3e-71 271.6 255 60.0
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.1e-70 270.8 182 72.0
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.1e-70 270.8 184 71.7
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.4e-70 269.6 259 59.1
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 4.1e-70 268.9 190 68.9
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 4.1e-70 268.9 213 64.3
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 9.2e-70 267.7 174 71.8
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.2e-69 267.3 190 67.9
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.2e-69 267.3 190 67.9
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 4.5e-69 265.4 242 58.3
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.3e-68 263.8 254 58.3
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-68 263.5 224 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 2.3e-68 263.1 201 64.7
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.9e-68 262.3 254 57.5
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.9e-68 262.3 251 58.6
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 6.6e-68 261.5 174 70.7
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.9e-67 260.0 239 57.3
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 8.0e-66 254.6 259 55.2
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.2e-64 250.8 176 67.6
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.9e-63 246.1 150 78.7
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.9e-63 245.4 166 71.7
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.4e-62 243.8 149 76.5
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.4e-62 241.9 257 56.4
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 2.6e-56 223.0 131 77.1
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.4e-54 217.2 189 59.3
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 4.6e-53 212.2 139 73.4
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 6.0e-53 211.8 141 73.8
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 3.9e-52 209.1 206 60.2
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 4.7e-50 202.2 121 77.7
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-49 201.1 119 83.2
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 6.8e-49 198.4 227 50.7
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 5.8e-48 195.3 260 48.1
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 2.4e-46 189.9 142 69.0
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 3.2e-46 189.5 127 78.0
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 4.6e-45 185.7 171 58.5
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.0e-44 184.5 260 47.3
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.7e-44 183.7 264 48.1
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 6.2e-42 175.3 135 68.9
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.5e-40 170.6 217 44.7
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 6.2e-34 148.7 165 54.5
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 7.9e-29 131.7 75 81.3
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 1.5e-27 127.5 103 61.2
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 5.6e-27 125.6 76 77.6
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.3e-26 124.4 76 77.6
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.4e-24 116.3 114 54.4
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 2.4e-22 110.2 104 58.7
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.2e-21 107.8 102 59.8
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.1e-21 107.1 125 49.6
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 4.9e-15 85.9 205 36.6
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.2e-13 81.3 168 36.9
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.7e-12 75.5 50 74.0
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 3.7e-10 69.7 87 42.5
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.1e-09 68.2 54 63.0
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.4e-09 67.8 153 32.0
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 2.4e-09 67.0 109 36.7
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 6.9e-09 65.5 128 35.2
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 8.4e-07 58.5 54 48.1
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 5.5e-06 55.8 56 57.1


User provided reference genes

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