Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 4.1e-195 684.9 431 100.0
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.5e-133 480.3 445 68.1
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 2.4e-131 473.0 435 73.6
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 4.2e-115 419.1 435 60.2
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.3e-108 397.5 461 63.3
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.3e-105 387.5 457 58.9
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 2.6e-101 373.2 463 62.9
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 2.5e-99 366.7 465 59.1
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 7.1e-99 365.2 450 51.8
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.0e-97 361.3 466 59.9
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 1.8e-97 360.5 437 57.7
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 2.3e-97 360.1 446 54.7
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 6.7e-97 358.6 442 56.3
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 6.7e-97 358.6 442 56.3
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.9e-96 357.1 450 51.1
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 7.4e-96 355.1 444 57.0
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 3.7e-95 352.8 447 54.8
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 6.2e-95 352.1 445 53.9
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 2.4e-94 350.1 452 52.2
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 9.0e-94 348.2 472 53.4
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.5e-93 347.4 430 54.9
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 2.6e-93 346.7 444 53.4
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 3.4e-93 346.3 460 56.1
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 1.7e-92 344.0 454 50.2
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 9.3e-91 338.2 453 58.1
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.2e-90 337.8 444 48.2
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 1.6e-90 337.4 445 49.7
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 3.5e-90 336.3 453 49.9
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 3.5e-90 336.3 466 47.6
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 6.1e-90 335.5 441 56.9
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.3e-89 333.6 448 48.9
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 3.0e-89 333.2 469 53.7
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.3e-88 329.7 440 56.4
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 3.3e-88 329.7 494 54.0
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 4.3e-88 329.3 451 61.6
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 5.7e-88 328.9 448 51.3
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 9.7e-88 328.2 439 47.8
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 3.7e-87 326.2 457 51.9
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 1.1e-86 324.7 449 56.8
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.1e-86 324.7 518 50.4
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 2.4e-86 323.6 490 50.8
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 2.4e-86 323.6 492 50.0
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 3.1e-86 323.2 437 52.6
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 3.1e-86 323.2 450 49.3
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 3.1e-86 323.2 466 54.9
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.1e-86 322.8 449 57.2
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.2e-85 321.2 451 59.4
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.2e-85 321.2 441 49.7
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.2e-85 321.2 445 47.4
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.5e-85 320.9 441 53.7
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 3.4e-85 319.7 446 46.9
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 2.2e-84 317.0 466 46.8
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 3.8e-84 316.2 455 51.4
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.4e-83 314.3 452 52.9
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 2.5e-83 313.5 460 50.7
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.5e-83 313.5 462 56.1
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 6.1e-82 308.9 491 43.8
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 6.1e-82 308.9 456 54.8
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 1.4e-81 307.8 475 47.4
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 3.0e-81 306.6 471 49.3
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 3.9e-81 306.2 481 51.1
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.9e-81 306.2 451 48.3
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 6.7e-81 305.4 443 49.9
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 2.5e-80 303.5 432 47.9
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.3e-80 303.1 454 49.1
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 4.3e-80 302.8 454 50.0
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 1.3e-79 301.2 451 46.1
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.3e-79 301.2 452 52.4
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.7e-79 300.8 453 50.1
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.2e-79 300.4 487 48.5
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.8e-79 300.1 469 44.1
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 4.8e-79 299.3 448 52.5
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 5.3e-78 295.8 468 45.7
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 6.9e-78 295.4 435 51.3
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 6.9e-78 295.4 465 44.1
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 2.0e-77 293.9 455 54.3
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.6e-77 293.5 453 47.5
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 2.6e-77 293.5 452 47.8
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.4e-77 293.1 414 49.3
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 3.4e-77 293.1 453 43.7
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 4.5e-77 292.7 469 49.7
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 4.5e-77 292.7 448 47.3
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.7e-76 290.8 454 47.6
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 1.7e-76 290.8 450 47.3
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.8e-76 289.7 448 49.6
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 6.5e-76 288.9 457 49.0
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 8.5e-76 288.5 447 46.8
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 8.5e-76 288.5 486 46.3
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 8.5e-76 288.5 455 48.6
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 5.5e-75 285.8 449 46.5
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 7.2e-75 285.4 472 46.8
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 7.2e-75 285.4 449 48.1
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 1.2e-74 284.6 461 46.9
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 4.7e-74 282.7 452 48.0
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 6.1e-74 282.3 458 42.8
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 1.8e-73 280.8 449 50.1
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 2.3e-73 280.4 437 45.8
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 2.3e-73 280.4 486 47.3
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 3.0e-73 280.0 477 45.9
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 6.7e-73 278.9 465 48.4
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 2.0e-72 277.3 439 48.7
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 1.3e-71 274.6 460 48.0
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.7e-71 274.2 453 47.0
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 1.7e-71 274.2 455 55.4
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.2e-71 273.9 468 43.4
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 6.3e-71 272.3 450 42.9
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 6.3e-71 272.3 460 41.3
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 8.2e-71 271.9 474 48.5
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.1e-70 271.6 446 46.6
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.4e-70 271.2 460 49.6
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 5.3e-70 269.2 448 43.1
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.2e-69 268.1 232 63.4
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 2.6e-69 266.9 451 41.5
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 2.6e-69 266.9 451 41.5
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 2.6e-69 266.9 451 41.5
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.6e-69 266.9 476 42.9
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 3.5e-69 266.5 455 43.3
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 7.7e-69 265.4 469 43.5
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 7.7e-69 265.4 455 43.1
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 3.8e-68 263.1 470 46.4
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.5e-67 261.2 472 42.8
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.5e-67 261.2 446 43.5
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.9e-67 260.8 238 60.5
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 3.2e-67 260.0 446 47.8
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 7.2e-67 258.8 441 48.5
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 1.6e-66 257.7 460 42.6
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 2.7e-66 256.9 461 42.1
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 2.7e-66 256.9 451 41.2
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 1.0e-65 255.0 443 47.2
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.0e-65 255.0 456 42.5
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.0e-65 255.0 461 41.4
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 6.7e-65 252.3 475 51.8
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.6e-64 250.4 451 44.6
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 4.4e-64 249.6 442 42.8
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.7e-63 247.7 450 42.4
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.1e-62 243.4 417 42.0
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 5.3e-62 242.7 482 39.0
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 1.3e-60 238.0 429 45.2
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 9.4e-59 231.9 379 42.5
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 3.7e-55 219.9 482 37.3
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.8e-54 217.6 459 37.9
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 4.7e-50 203.0 452 39.4
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 3.0e-49 200.3 441 39.9
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 3.0e-49 200.3 441 39.9
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 8.8e-49 198.7 441 39.7
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.2e-48 198.4 455 39.1
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.2e-47 194.1 482 36.1
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 7.0e-46 189.1 440 42.0
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.2e-45 188.3 351 41.9
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 7.2e-43 179.1 441 41.0
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 4.7e-42 176.4 475 38.9
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 2.0e-40 171.0 137 64.2
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 6.3e-39 166.0 467 38.1
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.7e-37 160.6 457 32.8
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 3.5e-37 160.2 353 39.7
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 1.7e-31 141.4 342 36.3
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 2.2e-31 141.0 106 77.4
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.9e-31 139.8 175 48.0
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 2.6e-24 117.5 100 60.0
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 4.4e-24 116.7 89 74.2
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.7e-23 114.8 87 66.7
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.3e-20 105.1 108 60.2
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 1.5e-19 101.7 89 61.8
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 3.1e-17 94.0 119 55.5
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 4.4e-16 90.1 86 54.7
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 1.3e-15 88.6 133 44.4
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 4.1e-14 83.6 109 55.0
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 4.1e-14 83.6 109 55.0
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 3.0e-12 77.4 126 43.7
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 5.1e-12 76.6 126 43.7
Medtr7g060890 Medicago truncatula HOM05D058659 ORTHO05D004478 5.1e-12 76.6 139 41.7
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 6.6e-12 76.3 494 27.1
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.8e-10 70.9 124 39.5
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 8.1e-10 69.3 184 32.6
Medtr3g032750 Medicago truncatula HOM05D058659 ORTHO05D012297 1.1e-09 68.9 139 41.0
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 3.1e-09 67.4 67 52.2
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 2.6e-08 64.3 143 35.0
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.4e-08 63.9 63 55.6
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 5.8e-08 63.2 52 73.1
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 4.9e-07 60.1 183 34.4
Medtr4g014050 Medicago truncatula HOM05D000001 ORTHO05D000003 1.1e-06 58.9 69 53.6
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 1.9e-06 58.2 110 37.3
Psat7g252960 Pisum sativum HOM05D000001 ORTHO05D000003 4.2e-06 57.0 49 63.3


User provided reference genes

Program Settings