Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2901.7 1486 100.0
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2778.4 1486 95.4
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2748.8 1486 94.6
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2731.8 1488 94.2
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2670.6 1487 91.9
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2666.0 1488 91.5
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2655.6 1487 91.0
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2632.4 1487 90.1
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2629.7 1487 89.8
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2602.4 1487 89.2
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2590.8 1478 89.2
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2553.9 1487 87.5
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2550.4 1479 88.0
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2444.1 1492 83.6
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2394.8 1499 81.4
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2394.4 1493 81.6
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2379.0 1499 80.8
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2378.6 1497 80.8
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2378.2 1498 80.8
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2355.1 1498 80.2
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2351.6 1498 80.2
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2350.1 1499 79.3
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2344.7 1494 80.3
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2343.9 1498 79.4
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2342.4 1500 79.1
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2326.6 1497 79.1
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2324.7 1498 79.0
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2321.6 1490 79.1
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2319.7 1499 78.1
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2318.5 1501 78.9
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2316.2 1492 78.4
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2310.4 1492 77.8
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2309.6 1492 77.8
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2302.3 1490 79.0
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2301.6 1492 77.6
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2294.2 1492 77.2
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2290.0 1480 79.0
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2288.1 1483 77.6
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2266.5 1498 77.2
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2262.3 1500 77.1
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2260.7 1533 75.5
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2257.3 1555 74.9
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2235.7 1497 74.7
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2229.5 1452 78.5
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2220.3 1495 75.3
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2211.0 1532 73.9
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2209.1 1493 75.3
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2206.0 1485 75.3
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2196.8 1484 75.5
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2196.0 1570 72.9
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2191.8 1498 74.8
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2191.8 1494 74.6
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2186.4 1497 75.0
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2182.9 1494 74.3
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2180.2 1497 74.7
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2180.2 1497 74.7
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2178.7 1497 75.5
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2178.7 1483 74.8
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2178.7 1491 74.2
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2178.3 1493 74.1
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2176.4 1484 75.0
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2171.0 1498 74.2
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2144.8 1497 73.8
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2143.2 1484 74.3
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2142.5 1489 74.0
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2142.1 1491 74.3
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2131.7 1487 73.4
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2126.7 1488 73.1
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2123.2 1497 72.3
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2122.1 1484 73.5
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2121.7 1552 71.2
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2113.6 1486 73.4
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2112.4 1491 72.1
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2110.5 1484 73.2
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2109.3 1496 73.1
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2109.0 1485 73.1
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2104.3 1493 72.9
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2102.4 1494 72.7
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2100.1 1495 72.7
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2095.5 1482 72.8
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2092.0 1492 72.7
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2092.0 1496 72.5
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2092.0 1483 71.9
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2085.5 1496 72.3
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2073.9 1483 71.7
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2069.7 1493 71.7
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2044.6 1474 71.4
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2043.1 1305 80.5
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 2042.7 1589 69.8
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2042.3 1302 81.3
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2040.8 1458 72.2
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2033.1 1493 69.7
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2026.5 1577 67.9
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2022.7 1491 69.3
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2014.6 1310 79.5
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1996.5 1275 79.4
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1961.0 1499 68.6
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1878.6 1393 72.2
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1874.8 1480 65.5
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1872.1 1222 78.5
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1862.8 1487 64.4
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1862.0 1304 73.9
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1851.6 1366 71.0
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1796.6 1446 66.3
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1787.7 1665 59.3
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1759.2 1436 62.6
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1721.4 1082 83.7
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1641.7 988 82.8
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1624.0 1514 57.5
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1619.0 1526 56.9
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1480.7 1416 58.8
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1401.3 1214 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1384.0 1292 57.4
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1373.6 1387 55.9
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1319.7 1372 55.2
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1122.1 739 79.6
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1120.5 745 76.0
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1100.9 1281 51.8
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.0e-311 1073.5 848 64.4
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 6.0e-262 908.7 788 61.9
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 6.4e-248 862.1 923 54.7
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 3.9e-245 852.8 711 63.7
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.6e-238 829.3 579 70.1
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 2.9e-216 756.9 609 64.5
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 1.3e-195 688.3 893 46.7
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 6.3e-187 659.4 602 59.6
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 5.3e-186 656.4 361 85.9
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 8.5e-176 622.5 742 48.5
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 5.6e-167 593.2 442 74.2
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.0e-164 584.7 477 67.9
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.6e-158 563.9 469 63.5
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.1e-143 515.8 568 54.4
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 6.4e-123 446.8 770 39.1
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 2.5e-103 381.7 1822 26.0
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 7.9e-97 360.1 1577 27.4
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.4e-93 349.4 445 45.4
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 6.9e-93 347.1 1599 26.0
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 4.2e-90 337.8 219 79.5
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.1e-81 308.9 348 51.4
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.4e-77 296.2 224 67.4
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.0e-72 278.5 230 62.2
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 4.0e-72 278.1 155 81.3
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 8.8e-72 276.9 239 62.3
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 4.8e-70 271.2 152 83.6
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.8e-67 261.5 273 54.9
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.6e-65 256.1 196 66.8
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.5e-47 196.4 102 89.2
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 3.7e-46 191.8 190 56.3
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 3.4e-39 168.7 218 49.1
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 3.7e-38 165.2 159 53.5
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 1.1e-37 163.7 183 54.1
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 1.9e-34 152.9 130 57.7
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 9.5e-34 150.6 344 34.0
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 8.3e-30 137.5 114 64.0
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 3.9e-27 128.6 107 63.6
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 1.1e-26 127.1 102 63.7
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 1.1e-24 120.6 56 92.9
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 2.0e-23 116.3 102 63.7
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.4e-23 115.2 65 78.5
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 9.9e-23 114.0 352 28.4
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.1e-21 110.5 67 77.6
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.7e-19 103.2 134 48.5
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.1e-16 92.4 112 50.9
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.2e-15 90.5 70 65.7
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.9e-14 85.9 53 79.2
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.9e-14 85.9 53 79.2
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 1.3e-09 70.5 34 91.2
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 1.3e-09 70.5 54 66.7
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 3.1e-08 65.9 40 80.0
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 6.9e-08 64.7 150 30.0
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 2.6e-07 62.8 150 30.0
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 2.2e-06 59.7 53 60.4


User provided reference genes

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