Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 2.2e-257 891.7 442 100.0
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 6.8e-230 800.4 442 88.5
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 1.2e-229 799.7 442 88.9
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 1.7e-225 785.8 444 87.4
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 1.1e-216 756.5 438 83.8
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 2.5e-216 755.4 441 83.7
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 7.3e-216 753.8 442 82.4
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 4.7e-215 751.1 445 82.9
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 2.3e-209 732.3 441 81.0
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 4.3e-208 728.0 453 77.3
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 6.2e-207 724.2 450 77.1
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 3.8e-204 714.9 448 79.2
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 2.9e-196 688.7 446 75.1
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 8.4e-196 687.2 449 74.4
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 5.4e-195 684.5 449 73.3
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 1.6e-194 682.9 448 73.9
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 2.7e-194 682.2 449 73.3
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 3.0e-193 678.7 440 73.4
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 6.7e-193 677.6 449 73.9
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 6.7e-193 677.6 449 73.5
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 1.9e-192 676.0 449 73.9
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.9e-192 676.0 449 73.9
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 3.3e-192 675.2 445 72.8
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 3.3e-192 675.2 449 71.7
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 4.3e-192 674.9 452 72.8
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.8e-191 672.2 449 73.3
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 8.1e-191 670.6 437 73.9
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 8.1e-191 670.6 457 71.3
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.4e-190 669.1 449 72.4
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 6.9e-190 667.5 449 71.9
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 6.9e-190 667.5 457 71.6
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 1.3e-188 663.3 457 70.2
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 3.2e-187 658.7 428 73.8
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 1.2e-186 656.8 452 70.1
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 1.2e-186 656.8 484 66.5
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 2.1e-186 656.0 435 72.9
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 2.7e-186 655.6 455 69.9
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 8.7e-185 650.6 456 71.3
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 8.7e-185 650.6 448 70.5
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 1.9e-184 649.4 457 67.8
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 9.6e-184 647.1 448 69.6
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 9.6e-184 647.1 448 70.1
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 6.2e-183 644.4 452 69.7
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 6.9e-182 641.0 454 68.7
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 1.2e-181 640.2 455 68.6
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 2.6e-181 639.0 453 68.9
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 3.4e-181 638.6 456 68.6
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 3.4e-181 638.6 433 70.9
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 2.9e-180 635.6 449 69.5
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.9e-179 632.9 453 68.2
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.9e-179 632.9 442 68.8
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.9e-179 632.9 435 70.3
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 2.5e-179 632.5 453 68.4
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 2.5e-179 632.5 455 69.0
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 7.1e-179 630.9 453 68.2
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 1.2e-178 630.2 453 68.4
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 1.2e-178 630.2 453 68.2
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 2.1e-178 629.4 455 68.4
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 3.5e-178 628.6 447 68.5
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 6.0e-178 627.9 451 66.5
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 1.8e-177 626.3 453 68.0
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 3.9e-177 625.2 456 66.0
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 8.7e-177 624.0 455 65.7
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 1.9e-176 622.9 448 68.1
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 4.3e-176 621.7 450 67.6
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 1.8e-174 616.3 411 73.2
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 1.5e-173 613.2 456 66.4
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 3.4e-173 612.1 448 65.8
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 3.4e-173 612.1 416 71.6
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 5.9e-173 611.3 456 67.3
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 2.2e-172 609.4 449 65.0
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 3.8e-172 608.6 455 66.8
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 5.0e-172 608.2 450 67.1
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 8.5e-172 607.4 443 67.7
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 1.1e-171 607.1 402 72.9
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 1.9e-171 606.3 447 67.6
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 9.4e-171 604.0 508 58.9
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.1e-168 597.0 447 66.4
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 4.3e-168 595.1 447 66.2
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 7.4e-168 594.3 449 66.4
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 6.3e-167 591.3 436 67.7
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 8.2e-167 590.9 448 65.0
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 1.1e-166 590.5 483 62.3
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 6.9e-166 587.8 449 65.3
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 6.9e-166 587.8 452 63.7
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 1.5e-165 586.6 409 70.2
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 4.5e-165 585.1 448 63.8
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 6.5e-164 581.3 447 64.0
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 1.2e-162 577.0 452 62.8
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 5.1e-161 571.6 438 65.3
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 6.7e-161 571.2 383 72.8
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 1.5e-160 570.1 391 71.6
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 2.8e-159 565.8 407 67.1
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 3.2e-155 552.4 446 60.8
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 2.7e-154 549.3 397 68.0
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 2.5e-139 499.6 372 65.6
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 1.6e-130 470.3 375 64.8
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 8.9e-129 464.5 455 49.9
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 1.7e-124 450.3 464 49.1
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 6.8e-121 438.3 337 64.7
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 9.8e-120 434.5 453 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 9.2e-118 427.9 451 47.2
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 2.8e-114 416.4 441 47.2
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 9.8e-112 407.9 287 68.6
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 2.3e-108 396.7 309 63.8
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 4.1e-102 375.9 515 39.6
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 4.0e-97 359.4 376 50.8
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 3.0e-84 316.6 448 40.8
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 1.8e-81 307.4 241 65.6
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.6e-72 276.9 195 64.6
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 4.6e-69 266.2 221 57.9
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 1.1e-67 261.5 448 35.7
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 4.5e-64 249.6 189 63.5
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 2.5e-38 164.1 468 29.5
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.2e-37 161.8 290 35.5
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.8e-36 157.9 107 68.2
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.7e-18 98.2 124 37.1
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 2.9e-10 70.9 318 22.3
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 3.5e-08 63.9 331 23.6
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 1.3e-07 62.0 335 22.7
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 1.7e-07 61.6 129 24.0
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 1.7e-07 61.6 318 24.8
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 3.9e-07 60.5 313 21.7
THA.LOC104821692 Tarenaya hassleriana HOM05D000792 ORTHO05D004195 8.6e-07 59.3 248 25.0
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 1.5e-06 58.5 133 24.1
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.5e-06 58.5 122 24.6
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 1.9e-06 58.2 233 24.5
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 1.9e-06 58.2 230 24.8
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 1.9e-06 58.2 326 21.8
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 3.3e-06 57.4 117 25.6
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 3.3e-06 57.4 117 25.6
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 3.3e-06 57.4 171 24.6
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 3.3e-06 57.4 133 23.3
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 3.3e-06 57.4 134 25.4
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 5.6e-06 56.6 133 22.6
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 5.6e-06 56.6 129 24.0
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 5.6e-06 56.6 129 24.0
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 5.6e-06 56.6 133 26.3
PGR102G2938 Punica granatum HOM05D000836 ORTHO05D000709 5.6e-06 56.6 133 29.3
HPP92_025390 Vanilla planifolia HOM05D006183 ORTHO05D007844 5.6e-06 56.6 228 25.0
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 7.3e-06 56.2 116 28.4
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 7.3e-06 56.2 122 25.4
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 7.3e-06 56.2 117 25.6
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 9.5e-06 55.8 224 26.3
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 9.5e-06 55.8 182 24.2


User provided reference genes

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