Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1702.2 851 100.0
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1674.1 851 97.9
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1671.4 851 97.8
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1667.1 851 97.6
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1607.8 851 94.1
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1576.6 849 92.6
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1575.8 849 92.6
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1568.5 849 91.9
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1568.5 849 92.5
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1563.1 849 91.9
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1553.9 851 90.4
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1552.0 851 90.2
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1487.2 844 86.8
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1486.9 851 85.7
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1476.1 851 84.8
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1474.5 843 85.4
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1473.0 851 84.6
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1459.9 852 84.5
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1458.0 849 84.3
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1457.2 844 85.2
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1454.1 852 84.3
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1453.0 851 84.0
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1446.8 851 83.3
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1446.0 851 84.7
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1437.6 856 83.3
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1436.8 855 82.7
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1434.9 869 81.9
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1434.9 851 84.1
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1432.9 860 81.2
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1427.2 852 82.9
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1415.6 844 82.9
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1414.8 851 84.0
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1406.7 860 80.0
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1405.6 855 81.3
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1401.0 860 79.8
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1399.4 852 81.1
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1398.3 860 79.7
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1392.9 853 79.8
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1391.3 851 81.4
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1390.6 853 81.0
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1389.8 853 81.0
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1389.0 851 80.5
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1388.2 917 76.3
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1387.1 851 79.9
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1385.9 931 76.0
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1384.4 854 80.9
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1382.9 874 79.1
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1380.9 916 77.2
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1376.3 848 79.4
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1376.3 848 80.0
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1375.5 919 74.6
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1375.1 851 80.1
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1373.2 853 80.3
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1370.5 900 75.7
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1369.0 857 79.3
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1369.0 919 74.2
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1365.1 864 78.6
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1364.4 853 78.8
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1361.3 851 79.2
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1361.3 849 79.3
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1359.0 851 79.7
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1357.0 857 78.9
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1347.4 854 78.7
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1347.0 866 78.9
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1340.9 847 77.9
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1339.7 844 78.6
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1338.6 881 77.3
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1331.6 851 77.8
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1330.9 847 77.3
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1319.7 863 75.4
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1314.3 848 76.4
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1312.4 949 70.5
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1308.9 768 84.2
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1304.3 865 75.4
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1298.9 865 74.7
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1297.0 865 74.8
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1297.0 865 74.8
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1296.2 865 74.9
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1295.8 865 75.0
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1295.8 865 75.0
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1295.8 865 75.0
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1295.8 794 80.1
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1294.6 865 74.8
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1293.1 865 74.5
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1289.2 872 74.2
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1254.6 848 73.7
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1252.3 848 71.9
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1245.0 864 70.6
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1238.8 733 82.3
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1154.0 848 70.6
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1145.6 847 68.7
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1105.9 858 69.5
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1092.8 850 62.4
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1088.2 1148 55.5
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 0.0e+00 1086.2 889 64.1
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1075.1 843 62.8
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.9e-297 1025.8 846 59.5
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.6e-291 1004.6 860 65.2
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 4.7e-280 968.0 696 72.8
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 3.4e-278 961.8 631 75.4
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 7.1e-276 954.1 804 62.9
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 7.6e-262 907.5 736 67.0
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 4.1e-239 832.0 609 68.3
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 4.1e-223 778.9 685 62.3
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 7.5e-209 731.5 468 80.3
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 1.2e-206 724.2 433 84.3
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.9e-205 719.5 481 74.2
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.9e-188 663.7 610 59.0
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.5e-185 654.1 342 96.2
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 2.4e-183 646.7 414 75.8
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.6e-177 626.7 369 86.2
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 3.7e-176 622.9 856 41.8
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.2e-159 566.2 365 75.1
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 5.4e-159 565.8 865 39.3
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.3e-147 528.1 440 65.0
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 3.4e-137 493.4 834 36.2
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.7e-118 429.9 337 59.9
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 7.9e-118 429.1 602 45.2
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 6.3e-115 419.5 377 62.1
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.1e-114 418.7 1011 30.9
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.0e-101 375.6 331 56.8
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 6.8e-93 346.3 269 62.5
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 6.6e-80 303.1 218 69.3
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 2.8e-78 297.7 165 86.1
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.0e-77 295.8 319 49.8
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 2.9e-75 287.7 245 58.4
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 4.6e-73 280.4 158 77.2
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 7.8e-49 199.9 97 99.0
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 9.6e-39 166.4 101 79.2
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.9e-34 152.1 97 75.3
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-33 148.7 98 76.5
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-33 148.7 95 76.8
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 1.0e-32 146.4 168 53.6
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 4.3e-31 141.0 94 73.4
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.3e-30 139.4 67 98.5
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-29 136.3 91 73.6
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-29 136.0 85 77.6
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-28 132.9 106 68.9
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-28 132.5 87 73.6
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.0e-27 129.8 185 47.6
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.4e-26 125.9 96 69.8
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.5e-26 125.2 125 59.2
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 4.2e-26 124.4 113 59.3
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 1.2e-25 122.9 100 66.0
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.1e-25 122.1 125 53.6
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 7.9e-25 120.2 103 64.1
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 5.1e-24 117.5 68 79.4
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 4.8e-22 110.9 61 82.0
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 1.1e-21 109.8 64 78.1
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.8e-21 109.0 96 61.5
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 5.0e-19 100.9 115 50.4
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 4.2e-18 97.8 54 94.4
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.8e-16 92.4 82 62.2
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 3.3e-15 88.2 52 78.8
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 9.7e-15 86.7 52 76.9
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 1.8e-13 82.4 49 83.7
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 3.4e-12 78.2 87 49.4
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 3.4e-12 78.2 87 49.4
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 5.0e-11 74.3 201 30.3
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 2.5e-10 72.0 37 91.9
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 4.2e-10 71.2 79 50.6
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 4.6e-09 67.8 85 50.6
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 1.3e-06 59.7 89 42.7


User provided reference genes

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