Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.2e-261 906.0 462 100.0
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.0e-215 753.4 461 85.9
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 4.6e-213 744.6 466 85.4
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 3.4e-208 728.4 462 83.8
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 3.6e-205 718.4 461 83.7
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.0e-199 700.3 463 81.4
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 2.9e-199 698.7 463 81.4
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 2.0e-195 686.0 461 80.7
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 3.1e-193 678.7 469 79.3
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 3.2e-190 668.7 461 77.7
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 2.1e-189 666.0 461 77.2
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 9.1e-185 650.6 462 74.2
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.1e-182 643.7 462 75.8
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 9.4e-182 640.6 471 73.5
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 2.7e-181 639.0 463 75.2
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.8e-180 636.3 473 71.9
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.0e-180 635.2 470 73.4
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.0e-179 632.9 473 71.5
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.6e-179 632.5 473 71.7
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 1.1e-177 627.1 472 72.0
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 1.4e-177 626.7 472 72.0
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 2.4e-177 625.9 468 71.4
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 2.4e-177 625.9 471 73.0
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 5.4e-177 624.8 464 72.8
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.3e-175 620.2 470 72.1
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 1.7e-175 619.8 471 71.1
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 2.5e-174 615.9 471 71.8
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 7.2e-174 614.4 470 70.4
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 8.0e-173 610.9 469 68.9
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 1.0e-172 610.5 470 69.8
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 3.0e-172 609.0 470 71.1
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 2.2e-170 602.8 471 69.9
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 2.4e-169 599.4 465 69.5
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 7.0e-169 597.8 476 69.3
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 9.2e-169 597.4 476 69.1
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 3.5e-168 595.5 474 68.6
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 5.9e-168 594.7 468 70.1
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.0e-167 594.0 475 69.1
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.3e-167 592.8 476 69.3
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.9e-167 592.4 470 69.8
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 8.6e-167 590.9 475 68.2
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 8.6e-167 590.9 440 72.0
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 3.3e-166 589.0 471 69.0
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 9.5e-166 587.4 466 68.2
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 3.6e-165 585.5 469 68.2
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 6.1e-165 584.7 472 69.1
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 8.0e-165 584.3 482 67.8
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 4.0e-164 582.0 481 66.5
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 4.0e-164 582.0 470 67.7
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 1.5e-163 580.1 469 68.9
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 3.4e-163 578.9 467 68.3
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 5.7e-163 578.2 471 68.6
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 5.7e-163 578.2 467 68.3
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 7.5e-163 577.8 472 68.0
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 1.3e-162 577.0 451 69.0
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.7e-162 576.6 444 70.0
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 4.9e-162 575.1 463 67.8
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 6.4e-162 574.7 471 68.2
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 8.3e-162 574.3 462 66.5
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.1e-161 573.9 471 68.2
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 3.5e-160 568.9 473 66.4
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 1.0e-159 567.4 465 68.0
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.3e-159 567.0 470 67.7
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.7e-159 566.6 469 67.6
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 2.3e-159 566.2 470 67.0
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 3.0e-159 565.8 470 67.7
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 5.0e-159 565.1 441 69.2
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 5.0e-159 565.1 484 64.7
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 1.5e-158 563.5 469 67.0
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.9e-158 563.1 406 72.9
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.6e-157 560.1 470 65.3
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 8.0e-157 557.8 469 64.8
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 8.0e-157 557.8 430 68.6
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 2.3e-156 556.2 469 64.2
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 2.3e-156 556.2 449 68.4
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 2.0e-155 553.1 469 64.8
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.0e-155 553.1 482 65.4
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 5.8e-155 551.6 469 63.5
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 5.8e-155 551.6 480 65.6
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 3.7e-154 548.9 515 62.1
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 4.9e-154 548.5 469 64.4
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 2.4e-153 546.2 469 64.0
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 5.4e-153 545.0 470 64.0
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 2.0e-152 543.1 449 65.9
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 3.9e-151 538.9 445 66.7
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 6.6e-151 538.1 469 62.9
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 8.6e-151 537.7 470 63.6
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 4.3e-150 535.4 470 61.9
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 2.1e-149 533.1 470 64.0
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 4.7e-149 531.9 468 62.4
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 4.7e-149 531.9 467 62.5
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-148 530.8 468 62.2
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 1.8e-148 530.0 471 63.3
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.8e-148 530.0 466 62.9
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 5.2e-148 528.5 471 63.1
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 5.2e-148 528.5 468 62.6
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 2.0e-147 526.6 468 62.0
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 2.6e-147 526.2 466 62.2
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 7.5e-147 524.6 468 61.1
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 7.5e-147 524.6 490 59.2
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.7e-146 523.5 469 61.6
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 1.4e-145 520.4 466 61.4
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 7.1e-145 518.1 471 62.2
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.6e-144 515.4 466 63.5
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 1.0e-143 514.2 494 59.3
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 7.3e-142 508.1 470 61.7
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 1.2e-141 507.3 476 61.6
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.7e-141 505.4 521 56.4
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.4e-140 503.8 469 61.2
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.2e-139 500.7 470 62.3
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 2.4e-137 493.0 466 59.4
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.6e-136 490.3 390 67.2
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 8.6e-135 484.6 474 58.9
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 7.3e-134 481.5 421 63.7
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 6.2e-133 478.4 440 60.0
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 3.1e-132 476.1 474 61.0
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 1.2e-131 474.2 446 61.0
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 2.6e-131 473.0 409 62.1
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 2.5e-126 456.4 421 61.3
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 2.8e-125 453.0 488 57.8
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 1.4e-116 424.1 406 58.1
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.2e-115 421.0 479 50.3
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 7.6e-115 418.3 471 54.8
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 3.2e-113 412.9 351 65.2
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 1.6e-109 400.6 346 62.1
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 2.2e-106 390.2 492 47.6
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.0e-103 381.3 413 53.5
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 2.3e-103 380.2 517 43.3
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.4e-100 370.9 499 44.1
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 1.5e-99 367.5 467 49.0
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.6e-93 347.4 471 47.6
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.0e-91 340.5 255 66.7
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 2.7e-88 330.1 364 55.2
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 1.9e-81 307.4 350 52.3
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 5.2e-79 299.3 460 40.2
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 4.1e-76 289.7 448 45.1
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 5.2e-71 272.7 389 42.4
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.7e-69 267.7 537 34.5
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 2.1e-64 250.8 256 57.4
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 8.8e-55 218.8 260 55.8
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 1.1e-52 211.8 400 36.2
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 9.2e-52 208.8 186 58.1
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 3.8e-50 203.4 190 55.3
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 1.2e-48 198.4 191 55.0
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 1.6e-48 198.0 140 71.4
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 7.5e-46 189.1 184 54.3
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 4.6e-43 179.9 407 32.9
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 5.9e-43 179.5 235 51.1
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 2.3e-42 177.6 277 40.8
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 8.3e-29 132.5 358 32.7
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 8.3e-29 132.5 121 54.5
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.2e-27 128.6 156 44.2
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 1.1e-25 122.1 143 55.9
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 1.1e-25 122.1 139 56.1
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 2.8e-24 117.5 158 50.0
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 2.8e-24 117.5 139 52.5
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 4.0e-23 113.6 63 79.4
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 2.4e-20 104.4 103 52.4
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 3.0e-18 97.4 168 47.0
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 3.0e-18 97.4 85 64.7
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 6.6e-18 96.3 98 52.0
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 1.9e-17 94.7 57 71.9
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 6.9e-15 86.3 232 27.6
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 1.3e-10 72.0 122 45.9
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 1.3e-10 72.0 51 70.6
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.7e-10 71.6 108 39.8
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.5e-09 68.6 43 79.1
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 2.1e-08 64.7 42 78.6
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 1.4e-07 62.0 212 31.1
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 1.2e-06 58.9 40 72.5
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 1.5e-06 58.5 42 64.3
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.6e-06 57.8 32 84.4
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 2.6e-06 57.8 50 58.0


User provided reference genes

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