Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 0.0e+00 1141.3 575 100.0
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 7.5e-213 744.2 372 100.0
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 6.4e-204 714.5 614 64.8
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 1.3e-201 706.8 596 65.4
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 9.3e-195 684.1 599 64.3
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.1e-187 660.6 599 62.9
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 1.4e-179 633.6 556 64.0
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 5.3e-174 615.1 603 61.0
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 4.9e-172 608.6 625 59.0
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 8.2e-167 591.3 617 56.7
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 2.4e-166 589.7 630 55.6
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 3.1e-166 589.3 617 55.8
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 1.9e-163 580.1 627 55.7
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 5.1e-161 572.0 537 61.8
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 2.2e-156 556.6 618 55.3
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 6.1e-154 548.5 593 55.6
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 4.8e-151 538.9 512 60.7
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 9.1e-150 534.6 618 52.8
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 2.5e-147 526.6 605 53.2
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 7.2e-147 525.0 619 51.4
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 3.6e-146 522.7 614 52.0
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 7.9e-146 521.5 591 53.3
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 2.6e-144 516.5 614 51.8
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 1.1e-142 511.1 621 51.0
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 9.1e-142 508.1 595 52.6
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 1.3e-140 504.2 622 50.5
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 2.2e-140 503.4 618 51.5
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 6.5e-140 501.9 568 53.9
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 2.2e-135 486.9 618 50.3
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 6.3e-135 485.3 627 49.3
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 8.0e-130 468.4 624 47.9
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 1.8e-129 467.2 619 47.0
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 8.8e-129 464.9 619 49.3
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 1.1e-126 458.0 656 46.6
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 1.5e-123 447.6 657 44.1
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 1.9e-123 447.2 637 46.0
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 4.2e-123 446.0 569 48.7
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 1.2e-122 444.5 606 47.0
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 1.2e-122 444.5 477 54.7
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 1.6e-122 444.1 618 44.7
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 8.0e-122 441.8 623 46.1
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 2.0e-120 437.2 626 46.2
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 3.4e-120 436.4 619 47.5
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 3.5e-117 426.4 373 64.1
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 1.2e-114 417.9 625 45.1
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 6.1e-114 415.6 607 46.6
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.7e-111 407.5 621 44.9
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 6.4e-111 405.6 621 44.6
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 6.4e-111 405.6 481 50.9
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 8.3e-111 405.2 620 46.1
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 5.4e-110 402.5 562 47.2
Ca_05986_v3 Cicer arietinum L. HOM05D001661 ORTHO05D001575 7.0e-110 402.1 204 99.5
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 2.0e-109 400.6 626 42.7
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 2.0e-109 400.6 522 48.1
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 2.0e-109 400.6 618 45.0
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.0e-109 400.6 614 45.3
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 3.9e-108 396.4 669 42.0
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 8.6e-108 395.2 618 44.5
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 7.3e-107 392.1 342 65.2
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 3.1e-105 386.7 622 43.9
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 8.9e-105 385.2 622 44.5
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 2.9e-103 380.2 622 43.1
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 4.9e-103 379.4 623 43.2
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 1.9e-102 377.5 615 42.4
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 3.2e-102 376.7 646 42.7
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 5.4e-102 375.9 610 43.6
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 5.4e-102 375.9 639 42.7
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 2.7e-101 373.6 625 42.7
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 7.8e-101 372.1 620 42.9
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 1.7e-100 370.9 619 42.0
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 2.3e-100 370.5 638 40.1
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 3.0e-100 370.2 598 42.5
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 3.9e-100 369.8 621 41.7
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 2.5e-99 367.1 617 42.5
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 3.6e-98 363.2 628 42.2
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 3.6e-98 363.2 628 42.2
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 6.8e-97 359.0 619 41.7
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 1.5e-96 357.8 362 59.4
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 4.4e-96 356.3 620 41.5
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 1.9e-94 350.9 644 40.8
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 2.1e-90 337.4 631 39.9
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 2.8e-90 337.0 518 44.0
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 4.7e-90 336.3 615 42.1
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 2.0e-88 330.9 601 40.3
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 2.6e-88 330.5 607 40.5
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 3.4e-88 330.1 574 43.0
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 4.9e-87 326.2 563 40.9
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 1.9e-86 324.3 594 38.9
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 2.4e-86 323.9 594 38.9
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 1.2e-85 321.6 588 40.3
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.2e-85 321.6 571 41.7
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.3e-84 318.2 482 45.4
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 3.9e-84 316.6 594 38.0
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 9.3e-78 295.4 577 39.2
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 2.8e-74 283.9 486 43.2
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 6.9e-73 279.3 549 38.8
Lalb_Chr10g0105241 Lupinus albus HOM05D004863 ORTHO05D005802 2.6e-72 277.3 221 67.4
Medtr5g081270 Medicago truncatula HOM05D004863 ORTHO05D005802 1.3e-68 265.0 216 68.1
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 2.3e-68 264.2 396 46.2
TPR.G25337 Trifolium pratense HOM05D004863 ORTHO05D005802 6.7e-68 262.7 268 57.8
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 4.3e-67 260.0 597 35.8
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 9.0e-65 252.3 563 36.2
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 2.5e-54 217.6 617 34.2
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 1.5e-51 208.4 401 38.2
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 8.2e-50 202.6 413 36.8
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 1.8e-49 201.4 328 44.2
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 1.8e-49 201.4 328 44.2
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 2.1e-45 188.0 366 39.1
ATR0174G036 Amborella trichopoda HOM05D004863 ORTHO05D005802 4.1e-41 173.7 588 31.1
HanXRQChr08g0221791 Helianthus annuus HOM05D004863 ORTHO05D005802 1.5e-40 171.8 268 42.9
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 1.1e-38 165.6 373 36.7
Solyc06g074860.2 Solanum lycopersicum HOM05D004863 ORTHO05D005802 1.3e-34 152.1 130 60.8
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 4.8e-34 150.2 619 28.4
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 3.1e-33 147.5 187 49.2
MD04G1165800 Malus domestica HOM05D004863 ORTHO05D005802 3.4e-32 144.1 224 45.1
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 1.7e-31 141.7 142 54.2
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 4.2e-30 137.1 182 50.0
Peaxi162Scf00114g01013 Petunia axillaris HOM05D004863 ORTHO05D005802 7.9e-29 132.9 141 52.5
RcHm_v2.0_Chr5g0049691 Rosa chinensis HOM05D004863 ORTHO05D005802 3.0e-28 131.0 220 42.3
CDE02G3956 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 4.4e-27 127.1 175 45.1
vmacro10020 Vaccinium macrocarpon HOM05D004863 ORTHO05D005802 4.4e-27 127.1 90 74.4
CDE09G0264 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 5.7e-27 126.7 243 40.7
SMO142G0069 Selaginella moellendorffii HOM05D004863 ORTHO05D005802 6.3e-26 123.2 606 26.9
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 2.6e-24 117.9 540 28.7
TPR.G38446 Trifolium pratense HOM05D000002 ORTHO05D000047 1.7e-23 115.2 131 54.2
Pp3c3_26738 Physcomitrium patens HOM05D004863 ORTHO05D005802 2.7e-21 107.8 663 26.1
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 6.1e-21 106.7 91 58.2
RcHm_v2.0_Chr7g0231161 Rosa chinensis HOM05D004863 ORTHO05D005802 2.2e-18 98.2 104 50.0
HanXRQChr08g0221801 Helianthus annuus HOM05D004863 ORTHO05D005802 3.7e-18 97.4 123 47.2
PSO063G7659 Papaver somniferum HOM05D004863 ORTHO05D005802 1.4e-17 95.5 112 50.0
Thecc.10G012000 Theobroma cacao HOM05D004863 ORTHO05D005802 3.1e-17 94.4 76 59.2
RcHm_v2.0_Chr5g0049701 Rosa chinensis HOM05D004863 ORTHO05D005802 5.9e-16 90.1 68 60.3
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 5.9e-16 90.1 92 50.0
Mapoly0041s0038 Marchantia polymorpha HOM05D004863 ORTHO05D005802 7.7e-16 89.7 705 22.7
Zm00001eb297000 Zea mays HOM05D004863 ORTHO05D005802 2.3e-12 78.2 130 41.5
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 5.7e-11 73.6 225 32.9
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.3e-10 72.4 186 36.0
PSO478G0733 Papaver somniferum HOM05D000294 ORTHO05D000177 2.2e-10 71.6 113 44.2
PSO063G5055 Papaver somniferum HOM05D003057 ORTHO05D003904 4.8e-10 70.5 153 35.9
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 2.4e-09 68.2 225 32.4
RcHm_v2.0_Chr0c11g0499361 Rosa chinensis HOM05D004863 ORTHO05D005802 5.4e-09 67.0 45 71.1
RcHm_v2.0_Chr0c11g0499561 Rosa chinensis HOM05D004863 ORTHO05D005802 5.4e-09 67.0 45 71.1
PSO170G4809 Papaver somniferum HOM05D003057 ORTHO05D003904 7.0e-09 66.6 93 43.0
Oeu041939.1 Olea europaea HOM05D004863 ORTHO05D005802 9.1e-09 66.2 54 51.9
BraA01t00992Z Brassica rapa HOM05D045410 ORTHO05D041625 2.0e-08 65.1 130 33.8
EL10Ac8g19299 Beta vulgaris HOM05D004863 ORTHO05D005802 2.9e-07 61.2 56 57.1
PSO339G1811 Papaver somniferum HOM05D000294 ORTHO05D000177 1.5e-06 58.9 202 31.2
PSO832G1972 Papaver somniferum HOM05D000294 ORTHO05D000177 1.5e-06 58.9 202 31.2
PSO832G3441 Papaver somniferum HOM05D000294 ORTHO05D000177 1.5e-06 58.9 202 31.2
RcHm_v2.0_Chr7g0231181 Rosa chinensis HOM05D004863 ORTHO05D005802 4.2e-06 57.4 141 34.8
A01p10460 Brassica napus HOM05D045410 ORTHO05D041625 5.5e-06 57.0 151 29.1


User provided reference genes

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