Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 2.8e-230 801.6 402 100.0
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 2.4e-213 745.3 372 100.0
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 2.1e-124 449.9 378 64.8
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 1.8e-120 436.8 389 62.7
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 1.1e-117 427.6 373 64.1
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 7.1e-117 424.9 378 63.2
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 3.4e-111 406.0 405 58.8
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 2.4e-109 399.8 363 62.3
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 6.0e-108 395.2 384 60.7
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 1.7e-107 393.7 350 64.0
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 5.1e-107 392.1 342 65.2
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 5.1e-107 392.1 378 60.1
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 4.8e-105 385.6 372 58.6
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 1.1e-96 357.8 362 59.4
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 8.4e-94 348.2 391 54.5
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 1.9e-93 347.1 391 53.7
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 2.7e-92 343.2 371 53.9
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 1.5e-90 337.4 394 51.5
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 7.4e-90 335.1 380 52.9
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 4.8e-89 332.4 385 52.7
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 1.9e-85 320.5 427 49.9
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 2.3e-83 313.5 398 49.2
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 5.1e-83 312.4 393 49.9
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 8.7e-83 311.6 390 50.3
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 3.7e-81 306.2 431 45.7
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 2.0e-79 300.4 397 47.6
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 3.4e-79 299.7 400 47.2
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 1.9e-77 293.9 380 50.0
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 9.3e-77 291.6 371 50.1
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 9.3e-77 291.6 401 47.4
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 6.1e-76 288.9 286 58.4
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 7.9e-76 288.5 404 46.5
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 1.9e-74 283.9 389 48.3
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 1.9e-74 283.9 389 48.3
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 5.7e-74 282.3 397 46.9
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 3.7e-73 279.6 417 44.6
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 4.5e-71 272.7 390 45.6
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 5.9e-71 272.3 403 45.2
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 3.8e-70 269.6 402 44.0
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 4.2e-69 266.2 364 48.9
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 1.6e-68 264.2 427 41.7
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 2.7e-68 263.5 358 44.4
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 1.8e-67 260.8 391 45.5
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 5.1e-67 259.2 392 45.7
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 4.1e-64 249.6 450 38.2
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 4.1e-64 249.6 395 42.3
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 9.1e-64 248.4 411 41.8
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 5.9e-63 245.7 402 41.8
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 1.0e-62 245.0 390 42.6
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 2.2e-62 243.8 396 41.9
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 3.8e-62 243.0 400 40.8
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 5.0e-62 242.7 392 42.3
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 5.0e-62 242.7 398 43.7
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 6.5e-62 242.3 398 43.7
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 8.5e-62 241.9 375 42.9
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 1.1e-61 241.5 466 37.1
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 1.9e-61 240.7 406 41.6
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 2.7e-60 236.9 399 41.1
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 4.7e-60 236.1 383 42.6
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 6.1e-60 235.7 375 43.5
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.4e-59 234.6 417 41.5
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 1.8e-59 234.2 423 40.4
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 5.9e-55 219.2 396 38.6
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 6.5e-54 215.7 409 38.9
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 8.5e-54 215.3 403 39.0
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 8.5e-54 215.3 426 37.6
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 3.2e-53 213.4 407 38.3
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 5.5e-53 212.6 382 40.6
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 6.1e-52 209.1 324 44.1
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 1.0e-51 208.4 411 38.4
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 1.8e-51 207.6 406 38.9
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 3.0e-51 206.8 399 40.1
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 6.7e-51 205.7 399 36.8
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 6.7e-51 205.7 374 38.5
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 1.2e-50 204.9 374 38.5
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 1.3e-49 201.4 328 44.2
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 1.3e-49 201.4 328 44.2
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 3.1e-48 196.8 374 37.2
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 7.0e-48 195.7 450 35.1
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 1.6e-47 194.5 398 38.2
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 4.5e-47 193.0 401 38.4
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 8.5e-46 188.7 414 36.5
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 4.2e-45 186.4 415 35.4
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 1.2e-44 184.9 419 37.0
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 1.2e-44 184.9 426 37.1
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 3.6e-44 183.3 421 36.6
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 3.6e-44 183.3 368 39.9
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 4.7e-44 183.0 416 35.6
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 6.1e-44 182.6 400 37.2
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 4.0e-43 179.9 428 34.3
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 8.8e-43 178.7 421 35.4
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 5.7e-42 176.0 429 33.8
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 7.5e-42 175.6 320 40.3
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 2.4e-40 170.6 336 38.7
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 4.1e-40 169.9 437 33.4
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 4.1e-40 169.9 437 33.4
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 1.2e-39 168.3 429 33.8
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 2.0e-39 167.5 272 40.8
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 8.0e-36 155.6 344 35.8
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 2.2e-33 147.5 187 49.2
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 1.2e-31 141.7 142 54.2
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 2.7e-31 140.6 167 50.9
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 7.8e-31 139.0 345 33.6
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 1.0e-30 138.7 380 33.9
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 2.9e-30 137.1 182 50.0
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 9.5e-29 132.1 306 35.6
CDE09G0264 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 4.0e-27 126.7 243 40.7
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 4.3e-21 106.7 91 58.2
RcHm_v2.0_Chr5g0049691 Rosa chinensis HOM05D004863 ORTHO05D005802 9.5e-21 105.5 158 42.4
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 2.1e-20 104.4 173 40.5
RcHm_v2.0_Chr7g0231161 Rosa chinensis HOM05D004863 ORTHO05D005802 1.5e-18 98.2 104 50.0
HanXRQChr08g0221801 Helianthus annuus HOM05D004863 ORTHO05D005802 2.6e-18 97.4 123 47.2
PSO063G7659 Papaver somniferum HOM05D004863 ORTHO05D005802 9.8e-18 95.5 112 50.0
Thecc.10G012000 Theobroma cacao HOM05D004863 ORTHO05D005802 2.2e-17 94.4 76 59.2
ATR0174G036 Amborella trichopoda HOM05D004863 ORTHO05D005802 6.4e-17 92.8 384 27.6
RcHm_v2.0_Chr5g0049701 Rosa chinensis HOM05D004863 ORTHO05D005802 4.1e-16 90.1 68 60.3
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 4.1e-16 90.1 92 50.0
SMO142G0069 Selaginella moellendorffii HOM05D004863 ORTHO05D005802 1.6e-15 88.2 341 28.2
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 1.0e-14 85.5 386 25.9
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 4.0e-11 73.6 225 32.9
PSO063G5055 Papaver somniferum HOM05D003057 ORTHO05D003904 6.8e-11 72.8 128 39.8
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 8.9e-11 72.4 186 36.0
PSO478G0733 Papaver somniferum HOM05D000294 ORTHO05D000177 1.5e-10 71.6 113 44.2
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 1.7e-09 68.2 225 32.4
PSO170G4809 Papaver somniferum HOM05D003057 ORTHO05D003904 4.9e-09 66.6 93 43.0
PSO339G1811 Papaver somniferum HOM05D000294 ORTHO05D000177 4.9e-09 66.6 93 43.0
PSO832G1972 Papaver somniferum HOM05D000294 ORTHO05D000177 4.9e-09 66.6 93 43.0
PSO832G3441 Papaver somniferum HOM05D000294 ORTHO05D000177 4.9e-09 66.6 93 43.0
Oeu041939.1 Olea europaea HOM05D004863 ORTHO05D005802 6.4e-09 66.2 54 51.9
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 4.1e-08 63.5 108 38.9
Pp3c3_26738 Physcomitrium patens HOM05D004863 ORTHO05D005802 1.6e-07 61.6 418 25.1
Mapoly0041s0038 Marchantia polymorpha HOM05D004863 ORTHO05D005802 6.6e-06 56.2 422 23.2


User provided reference genes

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