Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 4.5e-300 1033.9 548 100.0
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.2e-247 859.8 552 80.8
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 3.9e-243 844.7 575 80.7
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 5.1e-243 844.3 577 80.6
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 2.5e-229 798.9 553 76.5
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 2.2e-222 775.8 553 70.5
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 2.3e-219 765.8 559 71.0
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 4.3e-218 761.5 553 69.3
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 1.2e-215 753.4 560 70.0
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 3.4e-215 751.9 555 70.1
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 6.1e-212 741.1 560 68.8
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 2.1e-172 609.8 454 71.6
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 2.3e-158 563.1 547 57.6
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 1.2e-156 557.4 548 52.7
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 2.1e-156 556.6 530 59.1
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 4.9e-153 545.4 588 54.3
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 1.2e-151 540.8 557 51.2
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 1.2e-151 540.8 703 47.8
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 1.6e-151 540.4 557 52.4
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 4.3e-149 532.3 562 52.0
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 2.8e-148 529.6 594 52.5
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 4.0e-147 525.8 556 52.3
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 4.0e-147 525.8 561 51.3
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 3.2e-144 516.2 558 51.6
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 5.1e-142 508.8 560 50.0
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 3.1e-139 499.6 584 49.5
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 1.3e-137 494.2 551 48.3
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 1.3e-137 494.2 556 49.3
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 8.4e-137 491.5 558 48.4
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 2.4e-136 490.0 546 48.4
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 1.6e-135 487.3 578 48.4
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 2.1e-135 486.9 562 48.0
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 3.9e-134 482.6 574 48.8
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 8.7e-134 481.5 553 48.8
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.6e-132 476.1 572 47.2
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 8.1e-132 474.9 561 47.1
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 1.1e-131 474.6 605 45.5
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 4.0e-131 472.6 565 46.9
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 1.2e-130 471.1 554 46.8
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 1.2e-130 471.1 564 45.6
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 3.4e-130 469.5 570 45.8
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 7.6e-130 468.4 565 46.7
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 3.8e-129 466.1 558 44.4
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 6.4e-129 465.3 589 46.7
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 1.1e-128 464.5 563 45.1
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.2e-127 461.1 541 48.2
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 2.1e-127 460.3 558 46.8
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 7.9e-127 458.4 559 45.6
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 6.7e-126 455.3 577 48.7
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 1.9e-125 453.8 551 44.8
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 1.9e-125 453.8 574 46.3
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 2.1e-124 450.3 553 45.8
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 6.2e-124 448.7 563 45.6
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 6.2e-124 448.7 543 47.0
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 8.1e-124 448.4 551 46.5
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 5.3e-123 445.7 553 44.1
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 1.5e-122 444.1 583 44.8
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 1.5e-122 444.1 565 45.5
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 1.7e-121 440.7 594 43.1
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 1.2e-119 434.5 564 42.7
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 1.2e-119 434.5 549 44.6
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 2.3e-118 430.3 558 43.2
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 2.5e-117 426.8 574 42.3
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 1.6e-116 424.1 564 42.2
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 3.7e-116 422.9 555 45.8
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 3.7e-116 422.9 554 45.8
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 4.8e-116 422.5 539 46.0
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 6.3e-116 422.2 583 42.4
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 8.2e-116 421.8 548 45.4
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 9.0e-115 418.3 575 42.4
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 9.0e-115 418.3 558 44.6
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 5.9e-114 415.6 562 41.1
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 6.5e-113 412.1 529 45.9
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 1.1e-112 411.4 527 47.1
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 5.5e-112 409.1 562 40.6
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.1e-111 407.1 656 40.7
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 2.7e-111 406.8 558 41.9
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 2.5e-109 400.2 540 43.0
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 2.8e-108 396.7 499 44.5
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 3.7e-108 396.4 486 45.9
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 4.1e-107 392.9 472 46.8
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 3.2e-104 383.3 565 40.7
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 1.1e-99 368.2 590 40.2
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 4.1e-99 366.3 498 45.0
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 5.3e-99 365.9 494 43.7
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 2.5e-96 357.1 554 38.4
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 9.7e-93 345.1 572 39.0
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 5.9e-90 335.9 555 39.5
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 6.5e-89 332.4 330 49.7
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 7.5e-85 318.9 507 39.1
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 6.3e-84 315.8 406 47.5
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 4.0e-78 296.6 417 43.2
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 2.4e-75 287.3 481 41.8
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.1e-75 287.0 440 41.1
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 1.9e-72 277.7 348 44.5
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 3.4e-69 266.9 593 32.7
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.4e-69 266.5 421 40.4
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 2.5e-64 250.8 207 58.0
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 3.0e-62 243.8 481 36.4
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 2.0e-61 241.1 417 37.9
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 1.6e-58 231.5 551 32.5
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 8.6e-57 225.7 356 39.0
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 4.3e-56 223.4 194 55.2
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 2.3e-49 201.1 208 52.9
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.3e-46 191.0 148 61.5
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 6.8e-46 189.5 114 82.5
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 8.9e-46 189.1 148 61.5
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 2.5e-40 171.0 142 60.6
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 1.8e-38 164.9 589 28.7
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.1e-38 164.1 325 37.2
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.8e-36 157.1 119 63.0
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 8.4e-36 156.0 227 48.9
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.6e-26 123.6 159 44.0
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 7.3e-24 116.3 610 23.1
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 2.1e-15 88.2 81 55.6
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 3.6e-15 87.4 194 33.5
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 6.9e-14 83.2 66 57.6
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 6.4e-12 76.6 48 68.8
Ciclev10013286m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.0e-09 67.8 63 50.8


User provided reference genes

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