Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02791_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 1.3e-91 339.7 169 100.0
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 2.4e-66 255.8 136 88.2
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 7.0e-66 254.2 137 85.4
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 3.5e-65 251.9 140 85.7
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 9.4e-63 243.8 140 81.4
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 1.0e-61 240.4 139 83.5
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 1.8e-58 229.6 139 77.0
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 2.6e-57 225.7 136 76.5
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 3.5e-57 225.3 139 75.5
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 4.2e-55 218.4 139 74.8
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 2.2e-51 206.1 134 73.1
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 6.3e-51 204.5 137 70.1
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 1.2e-49 200.3 137 68.6
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 1.2e-49 200.3 136 67.6
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 3.5e-49 198.7 139 66.9
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 7.7e-49 197.6 137 65.7
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 1.7e-48 196.4 134 68.7
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 2.2e-48 196.1 137 65.7
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 2.9e-48 195.7 137 67.9
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 5.0e-48 194.9 137 66.4
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.0e-48 194.9 137 66.4
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.0e-48 194.9 137 66.4
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 5.0e-48 194.9 137 65.7
Atru.chr1.752 Acer truncatum HOM05D004178 ORTHO05D005204 6.5e-48 194.5 139 64.7
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 6.5e-48 194.5 137 63.5
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.1e-47 193.7 137 66.4
Cpa.g.sc121.6 Carica papaya HOM05D004178 ORTHO05D005204 1.9e-47 193.0 137 65.0
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 2.5e-47 192.6 137 65.0
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 3.2e-47 192.2 137 63.5
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 3.2e-47 192.2 139 64.7
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 5.5e-47 191.4 139 64.0
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 7.2e-47 191.0 139 64.0
BcaC03g13191 Brassica carinata HOM05D004178 ORTHO05D005204 7.2e-47 191.0 141 62.4
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 7.2e-47 191.0 143 61.5
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 9.4e-47 190.7 137 63.5
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 9.4e-47 190.7 140 61.4
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 1.2e-46 190.3 134 66.4
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 1.2e-46 190.3 136 64.7
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 1.6e-46 189.9 141 61.7
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 1.6e-46 189.9 134 66.4
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 2.1e-46 189.5 139 62.6
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 2.1e-46 189.5 137 63.5
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 2.7e-46 189.1 137 62.8
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 3.6e-46 188.7 141 62.4
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 3.6e-46 188.7 140 63.6
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 6.1e-46 188.0 136 63.2
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 8.0e-46 187.6 137 62.0
PGSC0003DMG400014287 Solanum tuberosum HOM05D004178 ORTHO05D005204 8.0e-46 187.6 143 60.1
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 1.8e-45 186.4 141 61.7
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.8e-45 186.4 148 60.8
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 1.8e-45 186.4 139 61.2
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 1.8e-45 186.4 139 61.2
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 2.3e-45 186.0 139 63.3
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 3.0e-45 185.7 139 62.6
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 3.0e-45 185.7 139 61.9
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 4.0e-45 185.3 136 62.5
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 4.0e-45 185.3 139 61.2
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 5.2e-45 184.9 133 63.9
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 5.2e-45 184.9 139 60.4
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 6.8e-45 184.5 137 62.0
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 8.8e-45 184.1 134 62.7
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 8.8e-45 184.1 133 61.7
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 8.8e-45 184.1 136 61.8
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 8.8e-45 184.1 139 60.4
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 1.2e-44 183.7 137 62.0
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 1.5e-44 183.3 166 55.4
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 2.0e-44 183.0 140 60.7
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 4.4e-44 181.8 132 65.9
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 4.4e-44 181.8 138 61.6
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.7e-44 181.4 148 60.1
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 7.5e-44 181.0 134 61.9
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 9.8e-44 180.6 139 59.7
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 1.3e-43 180.3 138 60.1
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 1.3e-43 180.3 129 60.5
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 1.7e-43 179.9 134 61.2
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 1.7e-43 179.9 134 61.2
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 1.7e-43 179.9 134 61.2
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 1.7e-43 179.9 134 61.2
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 1.7e-43 179.9 134 61.2
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 1.7e-43 179.9 140 58.6
Oeu021707.2 Olea europaea HOM05D004178 ORTHO05D005204 1.7e-43 179.9 134 59.7
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 2.2e-43 179.5 140 59.3
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 2.8e-43 179.1 134 61.2
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 3.7e-43 178.7 140 60.0
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 4.8e-43 178.3 139 59.0
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 1.1e-42 177.2 135 58.5
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 1.8e-42 176.4 137 59.1
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 1.8e-42 176.4 138 60.9
HPP92_022323 Vanilla planifolia HOM05D004178 ORTHO05D005204 4.1e-42 175.3 139 59.7
HPP92_022331 Vanilla planifolia HOM05D004178 ORTHO05D005204 4.1e-42 175.3 139 59.7
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 5.4e-42 174.9 134 60.4
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 1.6e-41 173.3 136 58.8
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 1.3e-40 170.2 133 60.2
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 3.8e-40 168.7 137 55.5
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 2.5e-39 166.0 174 48.9
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 3.3e-39 165.6 134 56.7
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 2.1e-38 162.9 140 55.7
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 2.8e-38 162.5 127 59.8
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 1.0e-37 160.6 134 56.7
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 1.4e-37 160.2 139 56.8
COL.COLO4_14102 Corchorus olitorius HOM05D004178 ORTHO05D005204 3.0e-37 159.1 134 55.2
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 3.0e-37 159.1 134 56.0
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 5.2e-37 158.3 134 56.0
Os09g0121050 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 4.4e-36 155.2 127 55.1
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 9.8e-36 154.1 133 52.6
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 8.3e-35 151.0 118 61.9
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 3.1e-34 149.1 136 52.2
FAN03G2333 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.4e-34 148.3 103 64.1
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 1.2e-30 137.1 136 47.8
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 2.8e-30 136.0 133 47.4
AUR62002220 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.3e-27 127.1 182 42.3
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 2.9e-27 125.9 136 44.9
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 2.7e-25 119.4 219 34.7
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 7.8e-17 91.3 103 45.6
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 2.6e-12 76.3 148 32.4
Ah.02g120680 Amaranthus hybridus HOM05D004178 ORTHO05D005204 1.6e-09 67.0 48 60.4
PRCOL_00006025 Prasinoderma coloniale HOM05D004178 ORTHO05D005204 2.5e-07 59.7 145 31.0
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 1.6e-06 57.0 103 34.0


User provided reference genes

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