Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02584_v3 Cicer arietinum L. HOM05D005775 ORTHO05D000023 8.9e-226 786.9 507 100.0
Psat1g018400 Pisum sativum HOM05D005775 ORTHO05D000023 8.8e-157 557.8 507 78.1
TPR.G17547 Trifolium pratense HOM05D005775 ORTHO05D000023 4.9e-147 525.4 508 75.4
Medtr2g049540 Medicago truncatula HOM05D005775 ORTHO05D000023 1.1e-135 487.6 526 64.3
Medtr5g076010 Medicago truncatula HOM05D005775 ORTHO05D000023 2.0e-132 476.9 463 69.5
TPR.G16641 Trifolium pratense HOM05D005775 ORTHO05D000023 1.7e-131 473.8 509 70.1
Lalb_Chr17g0335721 Lupinus albus HOM05D005775 ORTHO05D000023 5.4e-122 442.2 520 63.7
Glyma.19G151700 Glycine max HOM05D005775 ORTHO05D000023 3.0e-120 436.4 515 60.6
Glyma.03G148400 Glycine max HOM05D005775 ORTHO05D000023 1.7e-115 420.6 515 58.6
Phvul.001G146400 Phaseolus vulgaris HOM05D005775 ORTHO05D000023 5.2e-109 399.1 512 62.9
Lj1g0019119 Lotus japonicus HOM05D005775 ORTHO05D000023 4.6e-105 386.0 521 57.6
arahy.Tifrunner.gnm1.ann1.9RSW73 Arachis hypogaea HOM05D005775 ORTHO05D000023 4.8e-102 375.9 521 61.0
arahy.Tifrunner.gnm1.ann1.84DKWJ Arachis hypogaea HOM05D005775 ORTHO05D000023 6.2e-102 375.6 521 62.2
VMungo1383G3055 Vigna mungo HOM05D005775 ORTHO05D000023 3.8e-99 366.3 513 59.3
Rhsim01G0278600 Rhododendron simsii HOM05D005775 ORTHO05D000023 4.8e-94 349.4 518 51.9
Sed0017897 Sechium edule HOM05D005775 ORTHO05D000023 1.1e-93 348.2 462 63.4
GSVIVG01011040001 Vitis vinifera HOM05D005775 ORTHO05D000023 1.1e-93 348.2 467 60.8
Ciclev10019759m.g Citrus clementina HOM05D005775 ORTHO05D000023 9.0e-93 345.1 521 51.4
CSS0012831 Camellia sinensis var. sinensis HOM05D005775 ORTHO05D000023 1.7e-91 340.9 522 53.3
Hma1.2p1_0209F.1_g089290 Hydrangea macrophylla HOM05D005775 ORTHO05D000023 1.7e-91 340.9 524 57.4
Thecc.01G287300 Theobroma cacao HOM05D005775 ORTHO05D000023 3.8e-91 339.7 535 51.2
Prupe.8G249700 Prunus persica HOM05D005775 ORTHO05D000023 4.9e-91 339.3 528 51.1
Actinidia24301 Actinidia chinensis HOM05D005775 ORTHO05D000023 1.1e-90 338.2 515 53.8
Haze_04786 Corylus avellana HOM05D005775 ORTHO05D000023 1.6e-89 334.3 483 55.1
CiPaw.09G181700 Carya illinoinensis HOM05D005775 ORTHO05D000023 7.9e-89 332.0 465 61.9
ClCG00G000240 Citrullus lanatus HOM05D005775 ORTHO05D000023 7.9e-89 332.0 435 64.4
ClCG10G003500 Citrullus lanatus HOM05D005775 ORTHO05D000023 7.9e-89 332.0 435 64.4
QL12p023176 Quercus lobata HOM05D005775 ORTHO05D000023 7.9e-89 332.0 523 57.7
Dinv32979 Davidia involucrata HOM05D005775 ORTHO05D000023 1.8e-88 330.9 527 56.7
Rhsim13G0020300 Rhododendron simsii HOM05D005775 ORTHO05D000023 1.5e-87 327.8 511 56.9
vmacro02530 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 1.9e-87 327.4 510 50.4
MELO3C014018.2 Cucumis melo HOM05D005775 ORTHO05D000023 7.4e-87 325.5 487 58.1
Gohir.D08G079600 Gossypium hirsutum HOM05D005775 ORTHO05D000023 7.4e-87 325.5 539 50.6
Gorai.004G084600 Gossypium raimondii HOM05D005775 ORTHO05D000023 7.4e-87 325.5 539 50.5
Dinv11278 Davidia involucrata HOM05D005775 ORTHO05D000023 3.7e-86 323.2 516 56.0
CAN.G438.46 Capsicum annuum HOM05D005775 ORTHO05D000023 4.0e-85 319.7 505 56.8
Gohir.A08G071400 Gossypium hirsutum HOM05D005775 ORTHO05D000023 1.2e-84 318.2 539 50.3
Lj2C1182T1 Lonicera japonica HOM05D005775 ORTHO05D000023 1.2e-84 318.2 439 55.6
Cpa.g.sc731.2 Carica papaya HOM05D005775 ORTHO05D000023 2.0e-84 317.4 476 58.4
MD03G1273200 Malus domestica HOM05D005775 ORTHO05D000023 3.4e-84 316.6 439 63.6
CANSAT25G1854 Cannabis sativa HOM05D005775 ORTHO05D000023 1.0e-83 315.1 464 60.1
Cc01_g19990 Coffea canephora HOM05D005775 ORTHO05D000023 1.0e-83 315.1 522 55.4
Oeu047904.1 Olea europaea HOM05D005775 ORTHO05D000023 2.9e-83 313.5 464 59.3
Peaxi162Scf00517g00426 Petunia axillaris HOM05D005775 ORTHO05D000023 3.8e-83 313.2 432 56.5
Sed0008104 Sechium edule HOM05D005775 ORTHO05D000023 1.4e-82 311.2 435 60.7
Migut.N02129 Erythranthe guttata HOM05D005775 ORTHO05D000023 4.2e-82 309.7 510 56.3
Sc17g0003740 Simmondsia chinensis HOM05D005775 ORTHO05D000023 7.1e-82 308.9 480 57.3
PGSC0003DMG400026158 Solanum tuberosum HOM05D005775 ORTHO05D000023 1.2e-81 308.1 432 62.7
CsaV3_3G003500 Cucumis sativus L. HOM05D005775 ORTHO05D000023 2.7e-81 307.0 437 61.3
Aqoxy2G03167 Aquilegia oxysepala HOM05D005775 ORTHO05D000023 1.8e-80 304.3 521 48.6
COL.COLO4_08057 Corchorus olitorius HOM05D005775 ORTHO05D000023 3.0e-80 303.5 533 52.7
TAR365G0919 Trochodendron aralioides HOM05D005775 ORTHO05D000023 6.7e-80 302.4 521 56.0
Eucgr.H01610 Eucalyptus grandis HOM05D005775 ORTHO05D000023 4.3e-79 299.7 521 54.3
Sopen07g026610 Solanum pennellii HOM05D005775 ORTHO05D000023 4.3e-79 299.7 442 61.1
MSTRG.12583 Avicennia marina HOM05D005775 ORTHO05D000023 7.4e-79 298.9 453 58.5
Manes.01G212200 Manihot esculenta HOM05D005775 ORTHO05D000023 2.1e-78 297.4 514 50.8
Solyc07g053060.3 Solanum lycopersicum HOM05D005775 ORTHO05D000023 2.8e-78 297.0 451 58.5
RcHm_v2.0_Chr6g0292231 Rosa chinensis HOM05D005775 ORTHO05D000023 6.3e-78 295.8 529 50.5
TWI14G1024 Tripterygium wilfordii HOM05D005775 ORTHO05D000023 6.3e-78 295.8 522 49.2
FAN24G2890 Fragaria x ananassa HOM05D005775 ORTHO05D000023 6.9e-77 292.4 527 52.2
FAN20G1843 Fragaria x ananassa HOM05D005775 ORTHO05D000023 1.2e-76 291.6 526 48.3
Potri.016G119600 Populus trichocarpa HOM05D005775 ORTHO05D000023 2.6e-76 290.4 400 57.0
Migut.O00883 Erythranthe guttata HOM05D005775 ORTHO05D000023 3.4e-76 290.0 392 66.3
Sabra16G0115500 Salix brachista HOM05D005775 ORTHO05D000023 5.9e-76 289.3 433 53.8
ClCG00G003600 Citrullus lanatus HOM05D005775 ORTHO05D000023 2.9e-75 287.0 435 39.3
FAN15G0955 Fragaria x ananassa HOM05D005775 ORTHO05D000023 5.0e-75 286.2 527 51.6
TAR636G1825 Trochodendron aralioides HOM05D005775 ORTHO05D000023 1.4e-74 284.6 518 54.2
SalBow2G0958 Salvia bowleyana HOM05D005775 ORTHO05D000023 3.2e-74 283.5 450 58.0
PSO541G6072 Papaver somniferum HOM05D005775 ORTHO05D000023 4.2e-74 283.1 478 56.5
SGA_v2.0_scaffold172G39044 Striga asiatica HOM05D005775 ORTHO05D000023 1.6e-73 281.2 491 55.8
Ah.08g220410 Amaranthus hybridus HOM05D005775 ORTHO05D000023 6.1e-73 279.3 491 53.6
Atru.chr5.1309 Acer truncatum HOM05D005775 ORTHO05D000023 5.1e-72 276.2 472 58.7
HanXRQChr09g0252061 Helianthus annuus HOM05D005775 ORTHO05D000023 1.3e-70 271.6 505 45.5
Hund05366 Selenicereus undatus HOM05D005775 ORTHO05D000023 1.3e-70 271.6 524 46.9
MBI18_g06533_MAGBIO Magnolia biondii HOM05D005775 ORTHO05D000023 3.7e-70 270.0 438 58.0
Atru.BG.65.p Acer truncatum HOM05D005775 ORTHO05D000023 4.8e-70 269.6 350 70.6
FAN27G3110 Fragaria x ananassa HOM05D005775 ORTHO05D000023 4.8e-70 269.6 520 46.7
DCAR_005831 Daucus carota HOM05D005775 ORTHO05D000023 6.9e-69 265.8 510 47.1
AUR62037928 Chenopodium quinoa HOM05D005775 ORTHO05D000023 4.5e-68 263.1 372 60.2
THA.LOC104817539 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 2.9e-67 260.4 510 46.3
BraA04t17874Z Brassica rapa HOM05D005775 ORTHO05D000023 8.5e-67 258.8 426 49.5
Carub.0004s1199 Capsella rubella HOM05D005775 ORTHO05D000023 8.5e-67 258.8 441 49.2
ATR0487G016 Amborella trichopoda HOM05D005775 ORTHO05D000023 1.1e-66 258.5 466 49.4
CARHR124250 Cardamine hirsuta HOM05D005775 ORTHO05D000023 1.1e-66 258.5 444 48.4
A04p23470 Brassica napus HOM05D005775 ORTHO05D000023 1.4e-66 258.1 426 50.2
EL10Ac7g17159 Beta vulgaris HOM05D005775 ORTHO05D000023 1.9e-66 257.7 373 56.0
HanXRQChr12g0362741 Helianthus annuus HOM05D005775 ORTHO05D000023 1.9e-66 257.7 430 49.1
THA.LOC104800814 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 3.2e-66 256.9 430 50.7
Aa31LG1G29420 Aethionema arabicum HOM05D005775 ORTHO05D000023 5.5e-66 256.1 442 53.6
Aa31LG5G6080 Aethionema arabicum HOM05D005775 ORTHO05D000023 9.4e-66 255.4 446 48.4
BolC4t27488H Brassica oleracea HOM05D005775 ORTHO05D000023 1.6e-65 254.6 426 49.3
C04p59780 Brassica napus HOM05D005775 ORTHO05D000023 2.1e-65 254.2 426 49.5
DCAR_002776 Daucus carota HOM05D005775 ORTHO05D000023 3.6e-65 253.4 441 49.0
AUR62043492 Chenopodium quinoa HOM05D005775 ORTHO05D006285 6.1e-65 252.7 356 61.2
Thhalv10016605m.g Eutrema salsugineum HOM05D005775 ORTHO05D000023 1.0e-64 251.9 441 47.6
ECA234G1745 Erigeron canadensis HOM05D005775 ORTHO05D000023 1.4e-64 251.5 506 45.1
unitig_21.g20288 Utricularia gibba HOM05D005775 ORTHO05D000023 1.4e-64 251.5 443 57.1
SHI15422 Sapria himalayana HOM05D005775 ORTHO05D000023 8.8e-64 248.8 393 37.2
FvH4_2g24360 Fragaria vesca HOM05D005775 ORTHO05D000023 9.7e-63 245.4 441 56.5
SEGI_28259 Sequoiadendron giganteum HOM05D005775 ORTHO05D000023 1.3e-62 245.0 433 50.1
PSO302G0009 Papaver somniferum HOM05D005775 ORTHO05D000023 2.4e-61 240.7 384 60.9
AL4G25710 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 3.1e-61 240.4 425 49.4
AT2G30780 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 6.9e-61 239.2 428 47.9
Sp4g13280 Schrenkiella parvula HOM05D005775 ORTHO05D000023 1.5e-60 238.0 428 46.7
AL4G25690 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 2.5e-58 230.7 422 48.1
CARHR143390 Cardamine hirsuta HOM05D005775 ORTHO05D000023 1.0e-56 225.3 440 48.6
Carub.0004s3072 Capsella rubella HOM05D005775 ORTHO05D000023 3.0e-56 223.8 430 38.6
C04p19810 Brassica napus HOM05D005775 ORTHO05D000023 8.8e-56 222.2 475 32.6
Lsat_1_v5_gn_6_117561 Lactuca sativa HOM05D005775 ORTHO05D000023 1.1e-55 221.9 517 41.6
vmacro14952 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 2.2e-54 217.6 426 50.2
AT2G48000 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 1.4e-53 214.9 427 46.6
Zm00001eb287820 Zea mays HOM05D005775 ORTHO05D000023 7.7e-52 209.1 452 47.3
Os05g0407900 Oryza sativa ssp. japonica HOM05D005775 ORTHO05D000023 1.4e-48 198.4 415 45.3
PSO675G7470 Papaver somniferum HOM05D005775 ORTHO05D000023 2.8e-46 190.7 320 64.4
HPP92_003166 Vanilla planifolia HOM05D005775 ORTHO05D000023 1.4e-45 188.3 484 37.8
ClCG00G000230 Citrullus lanatus HOM05D005775 ORTHO05D000023 1.6e-44 184.9 156 55.8
Nn5g27607 Nelumbo nucifera HOM05D005775 ORTHO05D000023 2.0e-39 167.9 354 59.9
BcaB02g10341 Brassica carinata HOM05D005775 ORTHO05D000023 2.7e-36 157.5 441 37.6
MD11G1295800 Malus domestica HOM05D005775 ORTHO05D000023 1.3e-35 155.2 180 49.4
MD11G1295900 Malus domestica HOM05D005775 ORTHO05D000023 2.9e-35 154.1 125 55.2
CDE10G1068 Ceratophyllum demersum HOM05D005775 ORTHO05D000023 4.9e-30 136.7 186 41.4
Actinidia24862 Actinidia chinensis HOM05D005775 ORTHO05D000023 1.4e-29 135.2 332 30.1
BolC4t23514H Brassica oleracea HOM05D005775 ORTHO05D000023 1.8e-24 118.2 138 45.7
AL4G47600 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 3.7e-22 110.5 140 39.3
Actinidia00716 Actinidia chinensis HOM05D005775 ORTHO05D000023 2.0e-20 104.8 230 38.7
AagrBONN_evm.TU.Sc2ySwM_369.313 Anthoceros agrestis HOM05D005775 ORTHO05D000023 2.5e-18 97.8 387 43.4
Psat2g025200 Pisum sativum HOM05D021680 ORTHO05D000023 1.4e-13 82.0 98 46.9
Pp3c1_37670 Physcomitrium patens HOM05D005775 ORTHO05D000023 3.5e-12 77.4 188 30.3
Pp3c2_3210 Physcomitrium patens HOM05D005775 ORTHO05D000023 3.5e-12 77.4 437 41.9
Mapoly0072s0009 Marchantia polymorpha HOM05D005775 ORTHO05D000023 4.3e-10 70.5 169 32.5
SalBow6G2882 Salvia bowleyana HOM05D006414 ORTHO05D007780 4.7e-09 67.0 181 33.7
SalBow6G7209 Salvia bowleyana HOM05D006414 ORTHO05D007780 4.7e-09 67.0 181 33.7
SalBow6G5148 Salvia bowleyana HOM05D006414 ORTHO05D007780 6.2e-09 66.6 181 33.7
SalBow8G0663 Salvia bowleyana HOM05D000608 ORTHO05D007780 1.8e-08 65.1 180 33.3
Actinidia31219 Actinidia chinensis HOM05D008234 ORTHO05D010422 2.3e-08 64.7 161 32.9
SalBow8G2565 Salvia bowleyana HOM05D000608 ORTHO05D007780 3.1e-08 64.3 227 30.4
Sabra05G0067400 Salix brachista HOM05D006414 ORTHO05D007780 8.9e-08 62.8 202 30.2
AUR62003321 Chenopodium quinoa HOM05D006414 ORTHO05D007780 1.5e-07 62.0 178 29.8
CsaV3_6G045830 Cucumis sativus L. HOM05D006414 ORTHO05D007780 2.6e-07 61.2 186 30.6
AUR62016261 Chenopodium quinoa HOM05D006414 ORTHO05D007780 3.4e-07 60.8 237 27.4
AUR62043752 Chenopodium quinoa HOM05D006414 ORTHO05D007780 3.4e-07 60.8 237 27.4
Solyc04g054270.4 Solanum lycopersicum HOM05D006414 ORTHO05D007780 3.4e-07 60.8 172 30.2
Ca_17703_v3 Cicer arietinum L. HOM05D006414 ORTHO05D007780 4.4e-07 60.5 202 28.7
QL06p032569 Quercus lobata HOM05D006414 ORTHO05D007780 4.4e-07 60.5 253 27.7
Sopen04g023860 Solanum pennellii HOM05D006414 ORTHO05D007780 7.5e-07 59.7 172 30.2
PGSC0003DMG400012802 Solanum tuberosum HOM05D006414 ORTHO05D007780 7.5e-07 59.7 172 30.2
Potri.005G082400 Populus trichocarpa HOM05D006414 ORTHO05D007780 9.8e-07 59.3 185 28.6
TPR.G2171 Trifolium pratense HOM05D006414 ORTHO05D007780 9.8e-07 59.3 192 29.2
ClCG01G019140 Citrullus lanatus HOM05D006414 ORTHO05D007780 1.3e-06 58.9 229 27.9
MELO3C007791.2 Cucumis melo HOM05D006414 ORTHO05D007780 1.7e-06 58.5 186 29.6
Dinv19510 Davidia involucrata HOM05D006414 ORTHO05D007780 1.7e-06 58.5 228 26.3
Oeu028531.1 Olea europaea HOM05D006414 ORTHO05D007780 1.7e-06 58.5 187 27.3
GSVIVG01022204001 Vitis vinifera HOM05D006414 ORTHO05D007780 1.7e-06 58.5 131 33.6
Zm00001eb194340 Zea mays HOM05D006414 ORTHO05D007780 1.7e-06 58.5 180 29.4
CSS0011059 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 2.2e-06 58.2 131 32.1
CSS0026013 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 2.2e-06 58.2 131 32.1
Lj2A560T64 Lonicera japonica HOM05D006414 ORTHO05D007780 2.2e-06 58.2 192 29.7
Psat7g051760 Pisum sativum HOM05D006414 ORTHO05D007780 2.2e-06 58.2 209 26.8
Prupe.4G236100 Prunus persica HOM05D006414 ORTHO05D007780 2.2e-06 58.2 238 27.7
Sed0012904 Sechium edule HOM05D006414 ORTHO05D007780 2.2e-06 58.2 186 28.5
MSTRG.2541 Avicennia marina HOM05D006414 ORTHO05D007780 2.9e-06 57.8 127 33.1
Cc07_g15860 Coffea canephora HOM05D006414 ORTHO05D007780 2.9e-06 57.8 228 26.8
CiPaw.04G093800 Carya illinoinensis HOM05D006414 ORTHO05D007780 4.9e-06 57.0 131 32.8
Atru.chr4.307 Acer truncatum HOM05D006414 ORTHO05D007780 6.4e-06 56.6 127 33.1
MD03G1187700 Malus domestica HOM05D006414 ORTHO05D007780 6.4e-06 56.6 238 27.3
Duzib147G0014 Durio zibethinus HOM05D006414 ORTHO05D007780 8.3e-06 56.2 127 33.1
Eucgr.A01491 Eucalyptus grandis HOM05D001779 ORTHO05D001753 8.3e-06 56.2 128 32.0
Nitab4.5_0000156g0020 Nicotiana tabacum HOM05D006414 ORTHO05D007780 8.3e-06 56.2 172 29.7
TWI74G0679 Tripterygium wilfordii HOM05D006414 ORTHO05D007780 8.3e-06 56.2 186 29.0


User provided reference genes

Program Settings