Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 7.3e-67 256.9 115 100.0
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 5.8e-64 247.3 115 95.7
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 7.6e-64 246.9 115 96.5
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 9.9e-64 246.5 115 95.7
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 1.7e-63 245.7 115 95.7
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 2.2e-63 245.4 115 95.7
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 94.8
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 94.8
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.9
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 3.7e-63 244.6 114 94.7
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 94.8
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 93.9
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 93.9
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 93.0
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 92.2
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 93.0
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 93.0
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 93.0
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 92.2
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 92.2
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 93.0
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 93.0
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 93.0
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 92.2
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 92.2
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 91.3
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 90.4
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 92.2
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 91.3
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 91.3
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 91.3
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 90.4
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 91.3
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 91.3
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 89.6
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 87.8
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 89.6
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 3.9e-60 234.6 114 89.5
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 89.6
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 89.6
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 89.6
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 89.6
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 88.7
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 89.6
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 89.6
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 88.7
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 89.6
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 89.6
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 89.6
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 90.4
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 88.7
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 89.6
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 88.7
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.8
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 88.7
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.8
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.0
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.0
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.0
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 88.7
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.8
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 86.1
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.0
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 86.1
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.8
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 86.1
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 86.1
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 86.1
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 86.1
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 87.8
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 86.1
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 86.1
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 86.1
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 86.1
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 87.0
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 86.1
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 85.2
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 86.1
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.1e-57 226.5 135 78.5
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 85.2
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 85.2
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 85.2
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 86.1
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 84.3
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 84.3
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 6.8e-57 223.8 115 83.5
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 83.5
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 2.6e-56 221.9 112 89.3
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.6e-56 221.9 112 89.3
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.6e-56 221.9 134 76.9
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 9.9e-56 219.9 115 84.3
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 83.5
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 4.2e-54 214.5 105 90.5
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 4.2e-54 214.5 105 90.5
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 2.7e-53 211.8 113 79.6
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 2.7e-53 211.8 113 79.6
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.7e-53 211.8 115 80.0
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 2.7e-53 211.8 105 88.6
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.1e-51 206.5 105 87.6
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 1.5e-51 206.1 114 78.1
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 1.9e-51 205.7 105 84.8
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 3.3e-51 204.9 105 84.8
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 3.3e-51 204.9 128 75.0
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 5.6e-51 204.1 112 80.4
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 9.6e-51 203.4 105 83.8
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 3.6e-50 201.4 112 75.9
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 3.6e-50 201.4 115 78.3
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 4.8e-50 201.1 112 75.9
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 4.8e-50 201.1 112 75.9
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 4.0e-49 198.0 115 72.2
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 9.0e-49 196.8 115 74.8
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.6e-48 195.3 114 71.9
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 5.8e-48 194.1 98 89.8
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 9.9e-48 193.4 115 71.3
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.9e-47 191.8 114 71.9
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 8.4e-47 190.3 114 69.3
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 4.2e-46 188.0 130 66.9
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 1.6e-45 186.0 88 95.5
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 1.7e-44 182.6 115 67.8
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 6.6e-44 180.6 88 92.0
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 2.5e-43 178.7 180 52.8
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 4.3e-43 177.9 115 73.0
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 5.6e-43 177.6 115 66.1
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 3.6e-42 174.9 93 84.9
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 9.0e-41 170.2 80 93.8
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 1.5e-40 169.5 88 85.2
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 2.0e-40 169.1 90 85.6
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 2.6e-40 168.7 80 93.8
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 5.8e-40 167.5 84 90.5
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.3e-39 166.4 115 56.5
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 1.7e-39 166.0 80 91.2
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.9e-39 165.2 114 66.7
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 6.4e-39 164.1 82 89.0
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 1.1e-38 163.3 79 89.9
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 5.5e-38 161.0 81 85.2
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 7.9e-37 157.1 80 83.8
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 3.9e-36 154.8 84 83.3
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 6.7e-36 154.1 94 74.5
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 6.7e-36 154.1 80 82.5
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 1.9e-35 152.5 81 80.2
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 5.6e-35 151.0 81 81.5
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 4.0e-33 144.8 77 84.4
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 4.5e-32 141.4 110 56.4
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 4.2e-30 134.8 111 52.3
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 3.1e-25 118.6 64 82.8
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.0e-23 111.3 61 77.0
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.9e-22 109.4 56 87.5
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 2.5e-22 109.0 97 49.5
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 3.5e-21 105.1 114 44.7
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 3.5e-21 105.1 113 46.0
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 6.1e-21 104.4 71 64.8
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 1.9e-19 99.4 113 45.1
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 4.3e-19 98.2 54 81.5
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 1.4e-17 93.2 49 77.6
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 6.9e-17 90.9 54 77.8
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 2.0e-16 89.4 74 51.4
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.4e-16 88.6 117 37.6
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 2.0e-11 72.8 105 35.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.4e-09 66.6 40 72.5
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 3.1e-09 65.5 112 33.9
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 2.0e-08 62.8 116 31.0
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 4.5e-08 61.6 112 33.0
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 4.5e-08 61.6 113 27.4
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.7e-07 59.7 112 30.4
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 2.2e-07 59.3 112 29.5
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 3.8e-07 58.5 113 28.3
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 8.5e-07 57.4 117 28.2
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 1.1e-06 57.0 88 36.4
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 1.4e-06 56.6 117 31.6
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 9.4e-06 53.9 112 25.9


User provided reference genes

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