Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 2.6e-132 475.3 232 100.0
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 4.1e-61 238.8 227 57.7
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 5.4e-61 238.4 207 61.4
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 7.3e-58 228.0 267 50.2
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 1.2e-52 210.7 215 55.3
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 9.9e-47 191.0 176 60.8
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 3.2e-45 186.0 239 46.4
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 2.7e-44 183.0 193 53.4
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.5e-39 167.2 235 42.1
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 1.0e-35 154.5 217 42.4
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 9.6e-34 147.9 208 43.3
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 2.6e-31 139.8 198 41.4
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 1.0e-30 137.9 201 44.3
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.9e-30 136.3 243 38.3
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 8.4e-30 134.8 244 37.7
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 7.1e-29 131.7 219 39.3
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 2.8e-25 119.8 176 39.8
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 6.3e-25 118.6 192 41.1
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.1e-24 117.9 192 41.1
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 1.5e-23 114.0 250 37.2
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.5e-23 114.0 176 39.8
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 1.5e-23 114.0 203 37.9
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.0e-23 113.6 196 38.3
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 2.0e-23 113.6 198 36.9
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 4.5e-23 112.5 223 37.7
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 4.5e-23 112.5 212 39.2
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.6e-23 111.7 183 39.3
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.3e-22 110.9 187 38.0
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.3e-22 110.9 261 33.7
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.3e-22 110.9 188 38.3
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-22 110.5 184 37.0
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.2e-22 110.2 179 39.1
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.5e-22 108.6 179 39.1
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 6.1e-20 102.1 176 36.9
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.1e-20 102.1 198 34.8
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.4e-19 100.9 206 32.5
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.8e-19 100.5 245 36.3
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 1.9e-18 97.1 189 34.4
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 5.7e-18 95.5 256 31.2
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 7.4e-18 95.1 87 54.0
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-17 94.0 198 32.8
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 2.2e-17 93.6 259 32.4
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 2.4e-16 90.1 224 30.8
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 5.3e-16 89.0 228 32.0
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 5.3e-16 89.0 192 33.3
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 2.0e-15 87.0 150 41.3
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 2.0e-15 87.0 196 33.2
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 3.4e-15 86.3 189 34.4
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 3.4e-15 86.3 192 32.3
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 2.9e-14 83.2 227 31.7
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 3.8e-14 82.8 204 31.9
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 6.5e-14 82.0 228 28.1
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.9e-13 80.5 188 33.0
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.2e-13 79.7 226 28.8
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 5.5e-13 79.0 190 33.7
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.5e-13 79.0 206 31.6
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.6e-12 77.4 240 31.7
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 2.1e-12 77.0 195 31.8
Medtr2g037430 Medicago truncatula HOM05D006496 ORTHO05D008390 3.6e-12 76.3 54 64.8
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 3.6e-12 76.3 193 30.1
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 7.9e-12 75.1 173 31.2
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.0e-11 74.7 187 32.1
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.4e-11 74.3 211 31.3
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.8e-11 73.9 198 29.8
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 2.3e-11 73.6 211 30.8
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 3.0e-11 73.2 174 29.9
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 3.9e-11 72.8 168 32.1
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 5.1e-11 72.4 223 31.4
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 8.8e-11 71.6 225 28.0
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 8.8e-11 71.6 211 30.8
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 1.1e-10 71.2 218 30.7
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.1e-10 71.2 194 31.4
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 1.1e-10 71.2 96 43.8
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.5e-10 70.9 61 59.0
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 2.0e-10 70.5 74 47.3
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 2.0e-10 70.5 198 27.3
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 2.6e-10 70.1 198 26.8
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 3.3e-10 69.7 188 31.4
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 4.4e-10 69.3 173 30.6
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 4.4e-10 69.3 173 28.9
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 9.7e-10 68.2 222 28.8
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 2.2e-09 67.0 192 29.2
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 3.7e-09 66.2 178 31.5
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.1e-08 64.7 192 29.2
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.4e-08 64.3 103 35.0
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 1.8e-08 63.9 179 29.1
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 3.1e-08 63.2 200 30.0
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 5.3e-08 62.4 175 26.9
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 5.3e-08 62.4 225 28.4
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 7.0e-08 62.0 122 29.5
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 9.1e-08 61.6 52 57.7
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 9.1e-08 61.6 89 39.3
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.2e-07 61.2 205 31.2
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.5e-07 60.8 149 32.2
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-07 60.5 79 43.0
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 2.0e-07 60.5 212 25.0
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 2.0e-07 60.5 222 28.4
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 2.6e-07 60.1 119 31.1
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 2.6e-07 60.1 228 28.9
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 5.9e-07 58.9 176 29.5
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 1.0e-06 58.2 105 34.3
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.0e-06 58.2 105 34.3
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.0e-06 58.2 188 27.7
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 1.0e-06 58.2 64 48.4
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.3e-06 57.8 101 38.6
Phvul.004G007400 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.3e-06 57.8 78 41.0
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.7e-06 57.4 79 45.6
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 1.7e-06 57.4 79 45.6
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 1.7e-06 57.4 95 40.0
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 2.2e-06 57.0 60 45.0
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.2e-06 57.0 172 29.7
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 2.9e-06 56.6 178 29.2
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 5.0e-06 55.8 149 30.9
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 5.0e-06 55.8 172 29.1
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 6.5e-06 55.5 114 33.3
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 6.5e-06 55.5 86 32.6
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 8.5e-06 55.1 181 27.1
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 8.5e-06 55.1 173 27.7


User provided reference genes

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