Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 0.0e+00 1157.5 584 100.0
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 4.4e-309 1063.9 597 90.6
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 3.6e-303 1044.3 597 88.9
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 4.7e-303 1043.9 598 89.3
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 9.7e-301 1036.2 597 88.3
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 9.1e-299 1029.6 589 88.8
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 8.5e-297 1023.1 597 87.6
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 6.8e-294 1013.4 597 85.9
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 8.8e-294 1013.1 599 85.6
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 1.2e-293 1012.7 599 85.6
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 1.5e-293 1012.3 597 86.6
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 2.8e-292 1008.1 593 86.5
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 8.0e-287 989.9 637 80.2
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 2.0e-282 975.3 596 82.2
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 3.5e-282 974.5 597 81.4
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 1.3e-281 972.6 597 81.9
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 6.6e-281 970.3 597 82.1
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 1.5e-280 969.1 595 81.5
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 5.6e-280 967.2 595 81.2
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 9.5e-280 966.5 597 81.9
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 4.7e-279 964.1 595 80.8
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 1.0e-278 963.0 597 80.2
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 1.0e-278 963.0 597 80.7
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 1.4e-278 962.6 597 81.1
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.8e-278 962.2 594 81.6
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 4.0e-278 961.1 595 80.7
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 8.9e-278 959.9 602 81.6
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.2e-277 959.5 599 81.0
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 2.0e-277 958.7 597 80.7
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 4.4e-277 957.6 597 80.9
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 5.8e-277 957.2 598 80.1
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 3.7e-276 954.5 597 80.4
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 6.4e-276 953.7 617 78.3
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 6.4e-276 953.7 594 80.6
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 1.1e-275 953.0 594 80.6
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 9.2e-275 949.9 601 79.9
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 9.2e-275 949.9 601 79.9
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 1.2e-274 949.5 594 80.3
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 9.5e-272 939.9 595 79.3
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 9.5e-272 939.9 597 79.7
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 9.5e-272 939.9 594 79.6
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 1.6e-271 939.1 597 80.1
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 2.1e-271 938.7 588 79.6
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 2.8e-271 938.3 595 79.2
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 2.8e-271 938.3 625 76.8
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 4.7e-271 937.6 595 79.2
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 4.7e-271 937.6 598 79.4
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 8.0e-271 936.8 597 78.4
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 2.3e-270 935.3 597 78.9
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 3.1e-270 934.9 597 79.7
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 4.0e-270 934.5 597 79.6
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 6.8e-270 933.7 595 78.8
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 8.9e-270 933.3 599 78.3
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 9.8e-269 929.9 596 79.0
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 9.8e-269 929.9 614 78.2
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 2.2e-268 928.7 595 78.7
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 2.2e-268 928.7 597 77.7
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 3.7e-268 927.9 595 78.5
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 3.7e-268 927.9 596 79.0
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 4.9e-268 927.5 597 77.7
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 6.4e-268 927.2 595 78.5
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 8.3e-268 926.8 599 78.5
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 1.4e-267 926.0 595 78.7
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 4.1e-267 924.5 596 78.9
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 2.7e-266 921.8 603 78.9
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 1.7e-265 919.1 605 77.4
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 3.0e-265 918.3 595 78.3
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 3.0e-265 918.3 597 78.1
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 5.1e-265 917.5 604 76.7
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.5e-264 915.2 606 77.4
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 5.6e-264 914.1 620 76.1
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 1.6e-263 912.5 613 76.3
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 2.1e-263 912.1 593 78.2
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 1.8e-262 909.1 593 76.4
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 4.0e-262 907.9 612 75.8
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 4.0e-262 907.9 620 75.5
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 2.1e-258 895.6 595 76.6
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 3.0e-257 891.7 607 76.1
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 3.9e-257 891.3 595 76.5
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 8.6e-257 890.2 594 74.7
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 1.2e-255 886.3 595 75.1
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.1e-247 857.1 620 71.9
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 1.5e-245 852.8 509 82.7
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.4e-243 845.5 578 75.3
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.2e-236 822.4 598 72.1
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 6.0e-234 814.3 597 74.0
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.6e-231 806.2 597 71.0
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 3.7e-231 805.1 596 67.4
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 4.8e-231 804.7 458 87.6
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 3.8e-228 795.0 596 67.3
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 3.0e-225 785.4 597 69.3
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.9e-219 766.1 606 65.7
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.5e-219 765.8 605 68.6
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 2.5e-219 765.8 596 65.3
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 2.5e-211 739.2 597 62.1
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 1.8e-209 733.0 462 77.9
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.3e-209 732.6 569 69.1
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 5.1e-201 704.9 633 61.6
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 9.1e-198 694.1 633 61.0
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.4e-174 617.1 387 78.0
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.1e-158 564.3 621 49.4
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 2.6e-152 543.1 462 60.4
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 6.8e-145 518.5 588 49.8
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 3.9e-140 502.7 596 48.0
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 2.6e-136 490.0 306 81.0
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 1.1e-134 484.6 290 82.8
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 5.4e-134 482.3 290 81.7
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 6.9e-129 465.3 308 76.3
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.6e-128 463.4 307 76.2
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 3.4e-128 463.0 289 79.6
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.4e-126 456.8 310 74.8
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 6.0e-117 425.6 285 77.9
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 4.6e-109 399.4 322 66.5
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-104 384.8 545 44.4
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 3.7e-90 336.7 461 44.5
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.0e-72 277.7 217 65.9
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 3.5e-72 276.9 216 67.6
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 5.0e-55 219.9 177 65.5
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 9.5e-54 215.7 221 59.3
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 1.0e-52 212.2 195 62.6
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 7.5e-51 206.1 104 88.5
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 3.6e-45 187.2 210 49.5
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-37 161.8 136 60.3
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 1.4e-33 148.7 172 51.7
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 4.1e-33 147.1 87 80.5
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 5.4e-33 146.7 87 80.5
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 9.2e-33 146.0 480 32.5
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 4.6e-32 143.7 87 79.3
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 1.7e-31 141.7 107 66.4
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 1.3e-26 125.6 188 45.7
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.4e-25 121.3 114 55.3
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 9.9e-19 99.4 55 87.3
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 2.4e-17 94.7 54 83.3
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 8.7e-15 86.3 201 33.3
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.1e-13 81.6 72 65.3
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 4.8e-13 80.5 68 55.9
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 4.0e-12 77.4 44 81.8
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 7.6e-11 73.2 78 57.7
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 8.4e-10 69.7 37 86.5
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.4e-09 68.9 67 53.7
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.7e-08 64.7 55 52.7
TPR.G29746 Trifolium pratense HOM05D004763 ORTHO05D412220 1.3e-07 62.4 37 78.4
PGSC0003DMG402017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.5e-06 58.9 47 70.2
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.9e-06 58.5 40 62.5


User provided reference genes

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