Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 0.0e+00 1375.9 724 100.0
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 0.0e+00 1189.5 621 90.3
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 0.0e+00 1184.5 621 90.5
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 0.0e+00 1181.0 737 80.5
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 0.0e+00 1176.0 619 88.7
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 0.0e+00 1172.5 619 88.2
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 0.0e+00 1158.7 730 79.6
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 0.0e+00 1156.0 664 82.7
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 0.0e+00 1139.4 621 85.2
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 0.0e+00 1113.6 619 85.1
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 0.0e+00 1110.1 619 84.8
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 4.0e-304 1047.7 619 77.5
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 5.4e-301 1037.3 616 77.9
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 6.0e-300 1033.9 620 77.1
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.3e-299 1032.7 619 76.4
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 2.3e-299 1031.9 620 76.3
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 5.1e-299 1030.8 619 76.7
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 5.1e-299 1030.8 619 76.4
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 2.5e-298 1028.5 619 76.6
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 2.5e-298 1028.5 619 76.6
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.6e-297 1025.8 620 76.6
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 6.9e-296 1020.4 619 75.8
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 6.9e-296 1020.4 619 75.8
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 9.0e-296 1020.0 619 75.8
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 5.8e-295 1017.3 619 75.6
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.7e-294 1015.8 618 75.4
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 4.9e-294 1014.2 614 76.1
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 8.4e-294 1013.4 627 75.1
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 2.4e-293 1011.9 618 74.9
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 3.2e-293 1011.5 619 75.1
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 2.1e-292 1008.8 616 76.0
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 3.0e-291 1005.0 621 74.4
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 3.3e-290 1001.5 621 74.7
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 7.3e-290 1000.3 619 75.0
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 2.1e-289 998.8 620 73.9
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 8.1e-289 996.9 619 74.5
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 5.3e-288 994.2 620 74.2
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.9e-288 993.8 620 73.4
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 2.0e-287 992.3 618 73.9
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 3.4e-287 991.5 624 73.7
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 9.9e-287 989.9 646 71.8
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 2.2e-286 988.8 639 72.5
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 2.9e-286 988.4 620 74.0
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.4e-285 986.1 624 75.6
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.2e-284 983.0 623 73.2
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 2.1e-284 982.2 619 73.3
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 4.6e-284 981.1 620 72.6
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 3.0e-283 978.4 615 73.5
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 3.7e-281 971.5 625 73.0
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.4e-280 969.5 627 71.5
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 2.9e-278 961.8 597 75.7
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 7.1e-277 957.2 621 71.8
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 2.1e-276 955.7 621 71.7
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 2.1e-276 955.7 621 71.7
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 2.1e-276 955.7 621 71.7
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 3.5e-276 954.9 620 72.1
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 5.1e-275 951.0 622 71.7
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.5e-274 949.5 624 73.9
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.9e-274 949.1 618 71.4
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 4.3e-274 948.0 617 71.5
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 2.1e-273 945.7 621 71.3
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 2.8e-273 945.3 615 71.5
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 2.8e-273 945.3 622 73.3
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.2e-271 939.9 620 70.8
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 2.0e-271 939.1 621 71.3
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 2.6e-271 938.7 621 71.3
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 5.8e-271 937.6 632 69.9
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 1.3e-270 936.4 621 71.2
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 2.9e-270 935.3 621 71.2
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.9e-270 935.3 620 69.4
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 2.9e-270 935.3 630 68.7
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 4.9e-270 934.5 620 71.0
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 8.4e-270 933.7 616 71.6
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 2.7e-268 928.7 620 70.5
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.3e-267 926.4 620 69.8
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 9.7e-266 920.2 618 68.9
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.6e-265 919.5 618 68.9
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 4.8e-265 917.9 622 69.0
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 4.8e-265 917.9 622 69.0
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 2.6e-263 912.1 620 69.0
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 3.4e-263 911.8 622 69.8
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 4.5e-263 911.4 620 66.9
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 5.9e-263 911.0 649 66.4
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 4.2e-261 904.8 654 65.6
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 7.9e-260 900.6 669 65.0
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.5e-258 896.3 563 72.8
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 9.1e-256 887.1 621 67.8
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 9.1e-256 887.1 538 75.3
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.5e-255 886.3 597 69.8
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 2.0e-255 885.9 593 70.5
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 2.0e-255 885.9 571 73.2
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 6.5e-254 880.9 622 66.7
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 9.1e-248 860.5 619 66.9
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 5.9e-247 857.8 703 61.0
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.1e-245 853.6 637 64.2
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.0e-243 847.0 675 61.6
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 2.0e-242 842.8 535 73.8
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.7e-241 839.7 627 64.8
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.7e-238 829.7 591 68.4
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.9e-237 826.2 610 65.6
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.2e-237 824.3 620 63.4
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 6.3e-233 811.2 619 63.3
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.2e-231 807.0 628 63.9
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.1e-229 800.4 623 60.8
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.5e-229 798.1 620 62.1
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 3.4e-226 788.9 626 62.1
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 4.1e-224 781.9 642 59.2
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.2e-220 770.4 621 58.8
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 2.8e-220 769.2 538 75.1
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.8e-219 766.5 661 59.6
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.3e-219 766.1 552 65.9
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 3.0e-219 765.8 594 64.5
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 4.1e-216 755.4 620 59.2
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.6e-210 736.1 620 59.0
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 4.9e-209 731.9 644 55.0
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.5e-194 683.7 426 74.4
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 3.9e-190 669.1 536 59.9
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.1e-190 668.7 520 61.9
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 6.8e-187 658.3 619 54.4
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.2e-186 657.5 620 54.2
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.5e-186 657.1 443 69.3
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.0e-186 656.8 620 54.5
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 4.0e-179 632.5 438 68.5
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 5.3e-171 605.5 384 73.7
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.3e-169 600.9 432 65.5
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 2.9e-169 599.7 656 47.9
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.7e-167 593.2 426 65.5
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.6e-167 592.4 426 65.5
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.1e-163 581.3 442 61.5
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.4e-162 576.2 423 63.4
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 4.9e-161 572.4 712 42.6
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 5.0e-145 519.2 633 41.4
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 6.5e-145 518.8 656 43.0
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 3.3e-133 479.9 427 56.7
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.7e-132 477.6 426 55.4
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.7e-129 467.6 627 39.9
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 9.7e-125 451.8 318 66.7
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.2e-108 397.5 434 49.1
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 6.4e-100 369.4 191 88.5
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 5.0e-97 359.8 226 74.3
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.5e-88 331.6 188 78.2
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.5e-88 331.6 182 81.3
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.4e-83 315.1 168 82.7
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 3.0e-81 307.4 196 73.0
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 7.6e-77 292.7 185 70.8
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.7e-76 290.4 185 69.7
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.2e-74 285.4 185 71.4
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 3.0e-73 280.8 155 80.6
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 6.0e-66 256.5 166 72.9
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 3.0e-65 254.2 135 81.5
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.9e-56 224.9 150 68.7
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.5e-50 204.1 102 84.3
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 4.6e-50 203.8 132 68.9
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 3.5e-42 177.6 113 77.0
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 2.3e-41 174.9 84 88.1
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 4.8e-39 167.2 110 70.0
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.1e-35 156.0 147 56.5
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 2.5e-32 144.8 79 82.3
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 7.4e-32 143.3 100 68.0
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 4.5e-29 134.0 115 55.7
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 1.4e-27 129.0 85 76.5
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.7e-26 124.8 75 72.0
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.4e-25 122.5 72 76.4
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 3.9e-25 120.9 72 72.2
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.6e-13 82.4 50 74.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.5e-11 75.9 50 68.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 2.1e-10 72.0 44 72.7
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 5.2e-09 67.4 43 69.8
AagrBONN_evm.TU.Sc2ySwM_228.1939 Anthoceros agrestis HOM05D004736 ORTHO05D006424 1.1e-06 59.7 56 39.3
MCO14G383 Micromonas commoda HOM05D004736 ORTHO05D006424 1.8e-06 58.9 56 42.9
HPP92_014454 Vanilla planifolia HOM05D000645 ORTHO05D000494 4.1e-06 57.8 245 22.9
Gorai.002G004900 Gossypium raimondii HOM05D005091 ORTHO05D006047 5.3e-06 57.4 86 31.4
ATR0665G578 Amborella trichopoda HOM05D005091 ORTHO05D006047 7.0e-06 57.0 86 29.1
Gohir.D01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 7.0e-06 57.0 86 31.4
Cre17.g713900 Chlamydomonas reinhardtii HOM05D004736 ORTHO05D006424 9.1e-06 56.6 58 41.4
Os03g0681700 Oryza sativa ssp. japonica HOM05D004736 ORTHO05D006424 9.1e-06 56.6 58 41.4


User provided reference genes

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