Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 2275.4 1123 100.0
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 2026.9 1146 90.5
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1682.5 979 88.2
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1570.1 1013 81.2
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1445.6 1006 74.2
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1347.4 1002 70.0
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1343.6 1005 68.6
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1343.2 1011 70.3
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1330.9 1006 68.9
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1330.5 1010 69.7
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1329.3 1024 67.2
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1309.7 1008 68.1
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1301.6 1004 66.9
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1295.4 1009 66.8
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1294.6 1005 65.9
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1291.6 1001 66.7
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1290.4 1013 66.4
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1284.6 1006 66.9
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1280.8 1005 65.8
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1273.1 1031 64.2
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1270.4 1005 65.5
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1269.6 1031 64.1
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1268.4 1007 66.3
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1265.4 1007 65.4
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1261.5 1009 65.6
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1251.5 1062 64.1
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1242.3 1011 65.1
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1239.6 1006 64.6
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1236.9 1012 64.3
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1235.3 1005 65.7
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1228.8 939 67.8
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1227.2 999 65.8
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1224.9 1015 64.2
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1223.8 1056 61.4
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1223.4 1005 64.3
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1222.6 1000 63.8
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1216.8 991 64.6
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1216.4 989 63.7
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1216.1 1025 62.7
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1208.4 916 67.9
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1207.2 1006 63.5
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1206.0 1000 63.7
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1201.8 1006 63.1
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1201.8 1001 64.4
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1201.0 991 63.1
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1200.7 1021 61.7
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1198.3 1002 62.9
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1198.3 1001 63.3
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1197.6 991 63.1
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1194.1 1003 62.8
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1190.6 1006 62.2
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1190.6 1132 57.6
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1188.3 1000 63.0
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1186.8 1000 63.1
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1186.8 1024 62.9
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1185.2 1001 63.1
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1184.5 1000 62.8
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1183.3 997 63.9
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1182.5 1035 60.5
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1181.8 997 62.7
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1181.4 965 63.8
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1180.6 1009 61.4
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1177.2 1002 62.1
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1176.4 1043 59.4
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1176.0 1000 62.7
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1171.0 1013 61.9
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1168.3 1000 62.0
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1164.1 1010 61.9
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1162.9 1054 60.6
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1160.6 1013 61.6
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1160.6 1066 58.3
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1157.5 780 73.8
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1143.6 962 62.7
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1142.5 1094 56.7
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1137.1 998 61.6
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1135.9 1005 61.7
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1135.2 1016 60.5
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1130.2 1009 59.7
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1126.3 1009 59.2
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1123.2 738 76.7
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1100.5 779 71.1
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1099.0 779 70.3
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1089.7 779 70.5
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1089.3 997 60.5
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1083.9 779 69.6
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 2.0e-310 1069.3 1087 55.7
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 5.8e-310 1067.8 1003 56.1
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.9e-308 1062.8 767 69.5
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 8.1e-304 1047.3 731 72.9
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 9.9e-302 1040.4 988 57.2
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 1.0e-298 1030.4 783 66.4
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 3.3e-297 1025.4 745 68.6
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 4.5e-294 1015.0 781 66.5
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 5.5e-292 1008.1 973 56.5
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 6.0e-291 1004.6 1009 55.7
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 1.4e-263 913.7 1003 50.1
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 2.1e-259 899.8 930 52.3
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 8.8e-258 894.4 992 52.0
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 1.0e-253 880.9 780 59.5
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.1e-244 850.9 614 71.0
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 8.3e-216 755.0 745 55.6
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 2.1e-206 723.8 1027 41.9
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 7.8e-198 695.3 547 64.9
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 1.5e-196 691.0 898 43.5
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 2.2e-184 650.6 890 41.8
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 5.3e-162 576.2 862 39.4
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 7.4e-156 555.8 405 70.6
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 9.1e-146 522.3 421 66.5
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.9e-119 434.9 414 59.9
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 3.6e-118 430.6 359 62.7
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.0e-116 424.9 389 55.8
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 6.8e-109 399.8 301 68.1
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 1.0e-104 386.0 982 30.9
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.3e-91 342.4 212 84.4
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 1.1e-85 322.8 234 70.9
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 5.2e-85 320.5 227 67.8
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.8e-77 295.4 239 69.5
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 6.2e-70 270.4 204 70.6
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.1e-65 255.4 174 79.3
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 5.3e-61 240.7 187 64.2
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.4e-60 238.0 181 73.5
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 8.2e-54 216.9 203 59.1
CSS0033867 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.1e-50 206.5 208 58.7
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 6.1e-49 200.7 222 50.5
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.1e-47 196.4 154 68.2
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 3.3e-47 194.9 203 60.6
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 2.3e-40 172.2 174 57.5
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 5.3e-37 161.0 113 69.0
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 2.6e-36 158.7 146 61.6
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 3.4e-36 158.3 177 57.1
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.2e-34 151.4 78 88.5
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 5.5e-34 151.0 181 50.3
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 6.1e-33 147.5 96 69.8
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.8e-32 146.0 93 76.3
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.6e-31 142.1 93 74.2
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 4.4e-31 141.4 201 45.8
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 1.3e-22 113.2 90 62.2
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 1.3e-22 113.2 95 67.4
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 1.1e-21 110.2 168 41.7
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 1.3e-19 103.2 143 49.7
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.9e-18 99.4 143 46.9
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 8.8e-16 90.5 287 30.3
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 1.5e-15 89.7 292 26.4
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 1.3e-14 86.7 84 57.1
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 1.6e-12 79.7 230 27.0
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 7.7e-12 77.4 63 60.3
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 2.9e-11 75.5 174 34.5
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 5.0e-11 74.7 89 43.8
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 5.0e-11 74.7 97 47.4
Hma1.2p1_0436F.1_g152830 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.5e-10 73.2 64 59.4
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.3e-10 72.0 66 59.1
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 5.5e-10 71.2 56 60.7
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 9.5e-10 70.5 43 76.7
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 1.4e-08 66.6 74 45.9
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 1.4e-08 66.6 70 54.3
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.8e-08 66.2 39 79.5
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 2.3e-08 65.9 100 48.0
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 6.8e-08 64.3 77 45.5
SMO304G0058 Selaginella moellendorffii HOM05D042764 ORTHO05D004689 2.0e-07 62.8 183 27.9
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.7e-06 59.7 87 41.4
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 4.9e-06 58.2 43 62.8


User provided reference genes

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