Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 9.4e-260 899.8 468 100.0
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 9.1e-130 468.0 554 47.5
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 5.5e-127 458.8 514 48.4
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.1e-119 434.5 489 48.5
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 4.3e-111 406.0 450 50.4
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 8.0e-110 401.7 431 50.8
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.4e-106 391.0 505 45.0
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 5.4e-106 389.0 521 44.0
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.0e-105 385.6 500 47.0
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.3e-104 384.4 519 43.2
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 8.6e-104 381.7 517 43.5
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.5e-103 380.9 464 46.6
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.6e-102 377.5 501 43.9
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.1e-101 373.2 479 45.7
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 5.2e-101 372.5 479 45.3
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 3.2e-98 363.2 558 40.3
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 3.0e-96 356.7 526 40.9
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.2e-94 351.3 445 45.4
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 1.4e-93 347.8 445 45.2
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.4e-93 347.1 458 44.5
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.1e-87 328.2 444 51.8
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 1.2e-84 318.2 517 40.2
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.4e-82 311.2 481 39.7
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 2.4e-82 310.5 518 39.6
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 2.3e-80 303.9 479 40.3
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 2.3e-80 303.9 509 39.7
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 8.7e-80 302.0 430 40.5
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 1.9e-79 300.8 549 38.1
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 4.3e-79 299.7 521 36.9
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 2.8e-78 297.0 502 38.8
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 3.6e-78 296.6 512 38.1
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.4e-77 294.7 544 36.9
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 1.4e-77 294.7 496 38.1
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 4.0e-77 293.1 483 39.3
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 5.3e-77 292.7 521 38.0
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 1.2e-76 291.6 306 52.3
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.5e-76 291.2 477 40.7
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 2.2e-75 287.3 508 35.8
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 8.4e-75 285.4 479 38.4
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 8.4e-75 285.4 502 35.7
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.1e-74 285.0 490 35.5
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 1.1e-74 285.0 489 37.8
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.4e-74 284.6 482 37.8
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 1.4e-74 284.6 530 36.4
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 1.9e-74 284.3 506 37.4
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 2.4e-74 283.9 526 35.9
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.2e-74 283.1 490 35.1
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.2e-74 283.1 502 35.7
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 5.4e-74 282.7 541 36.2
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 1.2e-73 281.6 502 42.8
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.5e-73 280.0 477 38.2
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 3.9e-72 276.6 500 35.6
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 6.7e-72 275.8 506 36.8
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 1.1e-71 275.0 490 36.5
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 7.4e-71 272.3 494 43.7
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 4.8e-70 269.6 505 37.0
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 8.1e-70 268.9 520 35.0
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 4.0e-69 266.5 288 47.6
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.2e-68 265.0 509 36.7
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.7e-67 261.2 506 36.2
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 1.1e-66 258.5 288 47.2
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 3.2e-66 256.9 538 33.3
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.2e-65 255.0 428 37.6
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.6e-65 254.6 488 34.4
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 3.5e-65 253.4 489 34.8
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 4.6e-65 253.1 444 37.2
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 6.0e-65 252.7 460 37.6
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.3e-64 251.5 304 47.7
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 3.9e-64 250.0 509 35.4
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 8.7e-64 248.8 437 36.4
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 1.1e-63 248.4 432 37.5
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 9.6e-63 245.4 551 33.9
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.6e-62 244.6 434 39.4
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 6.2e-62 242.7 445 36.0
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 9.0e-61 238.8 467 36.0
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 1.5e-60 238.0 426 35.9
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 2.6e-60 237.3 503 32.8
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 2.6e-60 237.3 420 36.4
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 5.8e-60 236.1 491 34.8
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 7.6e-60 235.7 503 33.4
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 1.7e-59 234.6 502 34.5
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 2.2e-59 234.2 468 34.6
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.1e-58 231.9 431 35.0
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 1.9e-58 231.1 493 33.3
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 5.5e-58 229.6 427 35.1
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 2.1e-57 227.6 431 34.6
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 6.0e-57 226.1 497 33.0
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 6.0e-57 226.1 307 43.3
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.9e-57 225.7 488 33.8
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 8.7e-56 222.2 497 32.8
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.3e-55 219.9 159 66.0
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 2.8e-54 217.2 512 31.6
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 3.7e-54 216.9 494 31.8
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 6.3e-54 216.1 496 31.7
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 8.2e-54 215.7 512 31.4
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.4e-53 214.9 473 31.7
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 2.4e-53 214.2 496 31.5
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 3.1e-53 213.8 493 32.3
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 2.6e-52 210.7 479 33.8
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.4e-52 210.3 485 32.6
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 4.5e-52 209.9 492 31.9
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 1.0e-51 208.8 482 33.0
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 2.9e-51 207.2 366 33.6
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 7.2e-50 202.6 481 31.2
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.2e-50 202.6 307 39.7
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.2e-50 202.6 314 39.2
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 2.7e-49 200.7 481 31.4
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.0e-48 198.7 486 31.7
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 2.4e-45 187.6 289 41.5
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 7.7e-44 182.6 362 33.7
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 2.2e-43 181.0 549 29.5
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 2.9e-43 180.6 292 40.1
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 5.0e-43 179.9 248 45.2
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 9.4e-42 175.6 468 29.3
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 3.9e-40 170.2 485 28.5
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.7e-40 169.5 288 37.5
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.1e-37 162.2 337 32.3
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 5.3e-37 159.8 305 36.7
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.2e-34 149.4 275 38.2
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 1.4e-32 145.2 188 45.2
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 2.3e-32 144.4 162 46.3
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.7e-31 139.8 337 30.0
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 3.7e-30 137.1 286 34.6
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 3.1e-29 134.0 301 35.5
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.6e-28 131.7 301 31.6
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 2.6e-28 131.0 350 30.0
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 6.5e-27 126.3 184 38.6
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 4.7e-25 120.2 226 32.3
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.5e-23 115.2 385 27.0
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 2.0e-23 114.8 184 37.0
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 2.6e-23 114.4 485 24.1
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.6e-23 114.4 253 34.8
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.6e-23 114.4 543 25.2
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 2.6e-23 114.4 151 43.0
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 3.3e-23 114.0 143 47.6
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.7e-22 111.7 371 26.7
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.0e-19 102.4 174 36.8
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 3.2e-18 97.4 140 39.3
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 3.2e-18 97.4 69 62.3
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 9.4e-18 95.9 150 39.3
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.1e-17 94.7 396 24.7
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.7e-14 85.1 187 29.9
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 6.3e-14 83.2 151 35.8
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.4e-13 82.0 198 32.8
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 1.1e-10 72.4 80 46.2
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 1.5e-10 72.0 164 37.8
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 1.9e-10 71.6 95 44.2
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 1.9e-10 71.6 93 41.9
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 2.5e-10 71.2 109 42.2
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 4.2e-10 70.5 105 41.0
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 9.5e-10 69.3 63 52.4
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 3.6e-09 67.4 92 40.2
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 2.3e-08 64.7 92 40.2
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 3.0e-08 64.3 57 56.1
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 5.2e-08 63.5 59 54.2
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 1.2e-07 62.4 92 39.1
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 2.0e-07 61.6 87 40.2
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 4.4e-07 60.5 232 37.9
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 4.9e-06 57.0 132 31.1


User provided reference genes

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