Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 9.9e-111 403.7 237 100.0
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 3.8e-94 348.6 237 72.6
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 4.3e-90 335.1 237 70.0
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 5.0e-86 321.6 237 66.2
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.1e-85 320.5 235 65.1
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.9e-85 319.7 235 66.0
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 8.8e-83 310.8 238 65.1
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 4.4e-82 308.5 237 63.3
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 4.8e-81 305.1 231 64.5
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 1.1e-80 303.9 237 62.0
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 2.4e-80 302.8 237 62.0
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 3.1e-80 302.4 271 58.7
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 3.1e-80 302.4 271 58.7
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.9e-78 295.8 243 60.5
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.5e-77 293.5 237 62.0
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 4.2e-77 292.0 235 62.1
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 7.2e-77 291.2 243 60.9
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 9.4e-77 290.8 237 74.7
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 2.1e-76 289.7 241 71.8
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.7e-76 289.3 167 79.6
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 4.7e-76 288.5 235 61.7
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 1.5e-74 283.5 236 57.2
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 2.6e-74 282.7 235 58.7
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 5.7e-74 281.6 243 59.7
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 9.7e-74 280.8 235 57.9
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.4e-72 276.9 165 75.8
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.8e-72 276.6 243 58.0
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 3.1e-72 275.8 243 57.6
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 3.1e-72 275.8 236 55.5
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 4.1e-72 275.4 235 57.4
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 9.1e-72 274.2 243 57.2
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 1.2e-71 273.9 237 55.3
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 5.9e-71 271.6 237 54.4
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 2.9e-70 269.2 173 72.3
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 3.8e-70 268.9 246 55.3
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 3.8e-70 268.9 238 56.3
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 5.0e-70 268.5 237 54.0
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 6.5e-70 268.1 237 53.6
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 1.1e-69 267.3 242 56.6
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 1.1e-69 267.3 235 53.6
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 2.1e-68 263.1 235 55.7
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 2.7e-68 262.7 235 52.8
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 3.6e-68 262.3 235 57.0
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 6.1e-68 261.5 241 53.9
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 1.0e-67 260.8 235 53.6
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.0e-67 258.8 237 55.7
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 4.0e-67 258.8 238 53.4
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 5.2e-67 258.5 239 55.2
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 6.8e-67 258.1 246 55.3
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 6.8e-67 258.1 242 55.4
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 6.8e-67 258.1 236 55.5
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 6.8e-67 258.1 257 50.6
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.5e-66 256.9 237 55.7
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 5.7e-66 255.0 241 53.5
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 7.5e-66 254.6 237 55.3
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 2.2e-65 253.1 237 51.9
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.7e-65 252.3 237 51.1
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 4.8e-65 251.9 237 51.5
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 6.3e-65 251.5 237 52.3
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 6.3e-65 251.5 156 74.4
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 6.3e-65 251.5 248 52.8
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 6.3e-65 251.5 248 52.8
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 6.3e-65 251.5 248 53.6
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 8.3e-65 251.1 236 54.2
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 8.3e-65 251.1 244 53.7
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 5.3e-64 248.4 237 54.0
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 9.1e-64 247.7 237 54.4
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 4.5e-63 245.4 167 64.7
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.0e-62 244.2 241 52.3
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 1.0e-62 244.2 177 69.5
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 2.9e-62 242.7 238 53.4
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 3.8e-62 242.3 234 54.3
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 3.8e-62 242.3 237 53.6
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 6.5e-62 241.5 236 48.3
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 2.5e-61 239.6 265 46.0
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 4.2e-61 238.8 236 48.7
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 4.2e-61 238.8 236 48.7
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 4.2e-61 238.8 236 48.7
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 8.0e-60 234.6 236 48.7
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.8e-59 233.4 166 63.9
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 3.0e-59 232.6 250 48.0
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 6.8e-59 231.5 235 48.9
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.5e-58 230.3 250 48.4
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 4.4e-58 228.8 241 47.7
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 4.4e-58 228.8 166 62.0
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 9.8e-58 227.6 235 49.8
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 1.3e-57 227.3 135 83.0
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 2.8e-57 226.1 178 63.5
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 1.1e-56 224.2 265 43.4
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 3.1e-56 222.6 235 49.8
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.5e-55 218.8 235 49.4
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 4.5e-55 218.8 164 62.8
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 7.7e-55 218.0 237 48.1
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 1.7e-54 216.9 235 46.4
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 3.8e-54 215.7 156 66.0
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 3.8e-54 215.7 237 48.1
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 1.9e-53 213.4 236 48.7
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.7e-52 208.8 253 44.7
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.8e-51 206.8 165 61.2
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 4.0e-51 205.7 235 42.6
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 8.9e-51 204.5 237 48.5
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 8.9e-51 204.5 235 45.1
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 1.5e-50 203.8 162 62.3
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.3e-49 200.7 235 44.3
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.1e-48 197.6 236 42.8
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.4e-48 197.2 235 43.8
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.4e-48 196.4 235 43.4
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 5.0e-46 188.7 132 68.9
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 5.2e-43 178.7 165 53.9
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 7.5e-42 174.9 235 36.6
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 7.5e-42 174.9 127 63.8
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 9.2e-40 167.9 235 36.6
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.1e-37 161.0 98 75.5
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 7.3e-37 158.3 235 39.1
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 1.1e-35 154.5 114 63.2
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 8.9e-35 151.4 236 35.6
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 4.9e-33 145.6 235 38.7
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 4.9e-33 145.6 175 46.3
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 3.2e-32 142.9 104 68.3
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 4.1e-32 142.5 162 45.1
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.1e-31 140.2 98 72.4
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 7.8e-31 138.3 96 68.8
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.0e-30 137.9 181 46.4
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 6.6e-30 135.2 101 67.3
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.1e-29 134.4 98 63.3
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 8.1e-28 128.3 128 53.1
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.1e-27 126.3 101 66.3
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.7e-25 119.4 75 80.0
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 1.0e-22 111.3 70 72.9
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 6.6e-22 108.6 137 37.2
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.6e-22 108.2 71 69.0
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 4.7e-20 102.4 68 75.0
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.4e-18 96.3 91 50.5
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 3.8e-17 92.8 92 46.7
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 4.2e-16 89.4 90 51.1
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 7.1e-16 88.6 63 66.7
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 2.5e-13 80.1 48 70.8
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 7.3e-13 78.6 122 33.6
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 2.8e-12 76.6 105 40.0
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.9e-11 72.0 110 34.5
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 9.0e-11 71.6 103 35.9
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 1.2e-10 71.2 41 75.6
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 1.5e-10 70.9 41 75.6
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 2.6e-10 70.1 111 36.0
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 3.4e-10 69.7 108 43.5
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.4e-08 64.3 53 60.4
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.9e-08 63.9 45 62.2
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.6e-07 60.8 53 58.5
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.7e-07 60.1 60 55.0
Lj2g0017435 Lotus japonicus HOM05D004044 ORTHO05D004841 6.6e-06 55.5 116 29.3
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 8.7e-06 55.1 160 26.2
Lj6g0006771 Lotus japonicus HOM05D004044 ORTHO05D004841 8.7e-06 55.1 116 28.4
Oeu017406.1 Olea europaea HOM05D004044 ORTHO05D004841 8.7e-06 55.1 116 26.7


User provided reference genes

Program Settings