Gene: AT1G06790

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G06790
  • Transcript Identifier AT1G06790.2
  • Gene Type Coding gene
  • Location Chr1 : 2087645-2089039 : positive

Gene Family Information

  • ID HOM05D004774
  • #Genes/#Species 154/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G06790.2
  • uniprot Q9M9Y6

Descriptions

  • Description RNA polymerase Rpb7 N-terminal domain-containing protein
  • Computational description RNA polymerase Rpb7 N-terminal domain-containing protein; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7, N-terminal (InterPro:IPR005576), RNA polymerase III, subunit Rpc25 (InterPro:IPR013238); Has 892 Blast hits to 892 proteins in 299 species: Archae - 169; Bacteria - 0; Metazoa - 273; Fungi - 266; Plants - 84; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
  • Computational description RNA polymerase Rpb7 N-terminal domain-containing protein; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7, N-terminal (InterPro:IPR005576), RNA polymerase III, subunit Rpc25 (InterPro:IPR013238); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
Gene OntologyDNA-templated transcription, initiation
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0008380
IMP
Gene OntologyRNA splicing1
GO:0016070
IMP
Gene OntologyRNA metabolic process1
GO:0006384
IBA
Gene Ontologytranscription initiation from RNA polymerase III promoter2
GO:0006351
IEA
GOA Databasetranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003899
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus1
GO:0005666
IBA
Gene OntologyRNA polymerase III complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045113 RNA polymerase Rpb7-like
IPR013238 RNA polymerase III, subunit Rpc25
IPR036898 RNA polymerase Rpb7-like, N-terminal domain superfamily
IPR005576 RNA polymerase Rpb7-like , N-terminal
Mapman id Description
35.1 not assigned.annotated