Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 2.4e-125 452.2 232 100.0
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 9.7e-111 403.7 208 98.6
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 2.3e-59 233.0 234 56.4
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 1.5e-55 220.3 253 53.8
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 4.6e-52 208.8 264 47.7
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 9.6e-50 201.1 252 50.4
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 6.2e-49 198.4 237 50.6
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 2.0e-47 193.4 237 50.2
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 2.9e-46 189.5 237 47.3
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 8.4e-46 188.0 220 50.0
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 1.6e-44 183.7 220 49.1
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 5.1e-43 178.7 228 49.1
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 1.5e-42 177.2 213 52.6
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 2.1e-41 173.3 246 44.3
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 2.4e-40 169.9 225 44.9
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 6.9e-40 168.3 246 43.9
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 1.5e-39 167.2 232 45.7
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 2.0e-39 166.8 231 43.7
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 5.8e-39 165.2 210 50.0
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 9.9e-39 164.5 219 45.2
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 1.3e-38 164.1 229 45.0
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 6.4e-38 161.8 231 42.9
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 1.4e-37 160.6 221 44.8
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 7.1e-37 158.3 220 44.1
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 4.6e-36 155.6 220 46.4
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 1.3e-35 154.1 226 45.1
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 3.9e-35 152.5 150 54.7
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 1.3e-33 147.5 221 43.9
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 4.8e-33 145.6 240 41.7
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 2.0e-31 140.2 247 41.7
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 3.4e-31 139.4 228 42.5
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 3.4e-31 139.4 228 42.5
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 7.6e-31 138.3 223 42.6
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.0e-30 137.9 188 45.7
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 9.3e-29 131.3 217 43.3
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 7.9e-28 128.3 222 43.7
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 3.9e-27 125.9 222 43.2
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 6.3e-25 118.6 209 43.1
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 4.1e-24 115.9 227 40.1
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 9.0e-24 114.8 231 37.7
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.0e-23 113.6 197 41.1
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 5.9e-23 112.1 232 37.1
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 7.6e-23 111.7 237 33.3
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 1.7e-22 110.5 221 34.8
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 2.2e-22 110.2 234 38.5
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 5.0e-22 109.0 224 36.6
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 6.5e-22 108.6 234 38.0
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 8.5e-22 108.2 195 43.1
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 1.1e-21 107.8 220 38.6
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 3.2e-21 106.3 222 36.5
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 1.6e-20 104.0 225 38.2
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 1.6e-20 104.0 225 38.2
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 3.6e-20 102.8 225 37.3
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 4.6e-20 102.4 248 35.1
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 7.9e-20 101.7 176 43.2
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 6.7e-19 98.6 237 37.6
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 8.8e-19 98.2 118 44.9
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.1e-18 97.8 239 34.7
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 3.7e-17 92.8 155 38.7
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.1e-16 91.3 229 34.1
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 4.1e-16 89.4 225 32.9
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 6.9e-16 88.6 231 33.8
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 1.2e-15 87.8 96 55.2
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 2.0e-15 87.0 229 34.1
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 5.9e-15 85.5 215 34.0
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 5.5e-13 79.0 239 32.6
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 7.9e-12 75.1 234 32.9
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 1.0e-11 74.7 239 31.4
FvH4_5g27761 Fragaria vesca HOM05D004863 ORTHO05D005802 1.4e-11 74.3 138 40.6
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 1.4e-11 74.3 236 31.4
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 3.0e-11 73.2 258 29.8
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 3.9e-11 72.8 225 32.9
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 3.9e-11 72.8 225 32.9
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 5.1e-11 72.4 195 32.3
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 1.1e-10 71.2 144 36.8
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 3.3e-10 69.7 97 50.5
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 4.4e-10 69.3 256 31.6
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 4.4e-10 69.3 236 30.9
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 7.4e-10 68.6 145 35.9
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 9.7e-10 68.2 256 30.9
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 9.7e-10 68.2 65 53.8
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 9.7e-10 68.2 234 30.3
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 9.7e-10 68.2 203 32.5
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 2.2e-09 67.0 143 35.0
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 2.8e-09 66.6 252 29.0
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 4.8e-09 65.9 139 36.7
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 4.8e-09 65.9 224 29.9
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 8.2e-09 65.1 216 30.6
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 1.8e-08 63.9 217 30.0
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 3.1e-08 63.2 144 35.4
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 7.0e-08 62.0 142 35.9
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 1.2e-07 61.2 237 29.1
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 1.2e-07 61.2 204 31.9
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 4.5e-07 59.3 135 35.6
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 4.5e-07 59.3 135 35.6
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 5.9e-07 58.9 140 35.0
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 1.3e-06 57.8 142 32.4
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 1.3e-06 57.8 89 40.4
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 1.7e-06 57.4 91 41.8
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 2.9e-06 56.6 139 33.1
RcHm_v2.0_Chr7g0231171 Rosa chinensis HOM05D004863 ORTHO05D005802 2.9e-06 56.6 137 33.6
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 3.8e-06 56.2 139 33.1


User provided reference genes

Program Settings