Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047652 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D015222 2.5e-90 335.5 177 100.0
CSS0031316 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D015222 3.3e-66 255.4 180 80.0
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 4.7e-49 198.4 155 73.5
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 1.8e-48 196.4 155 72.3
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 1.7e-43 179.9 155 63.9
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 1.5e-42 176.8 155 64.5
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 3.3e-42 175.6 153 64.7
GSVIVG01000874001 Vitis vinifera HOM05D001670 ORTHO05D002980 5.6e-42 174.9 119 79.0
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 6.2e-41 171.4 155 61.9
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 8.1e-41 171.0 155 65.2
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.1e-40 170.6 153 62.7
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.6e-39 166.0 153 60.8
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.6e-39 166.0 153 60.8
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.4e-39 165.6 153 58.8
Haze_02721 Corylus avellana HOM05D001670 ORTHO05D002980 9.9e-39 164.1 153 61.4
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 9.9e-39 164.1 155 61.3
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.3e-38 163.7 162 60.5
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 1.3e-38 163.7 155 59.4
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 1.7e-38 163.3 156 61.5
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 2.2e-38 162.9 153 58.2
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 2.9e-38 162.5 155 61.9
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 4.9e-38 161.8 155 59.4
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 4.9e-38 161.8 156 58.3
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 6.4e-38 161.4 156 62.2
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 8.4e-38 161.0 153 59.5
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 1.1e-37 160.6 155 58.1
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.4e-37 160.2 155 60.6
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 1.4e-37 160.2 155 60.6
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 2.4e-37 159.5 153 57.5
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 4.2e-37 158.7 155 58.7
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 5.4e-37 158.3 155 59.4
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 5.4e-37 158.3 155 56.8
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 7.1e-37 157.9 153 60.8
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 7.1e-37 157.9 155 56.1
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 7.1e-37 157.9 156 57.1
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.2e-36 157.1 157 58.6
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.2e-36 157.1 157 58.6
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 1.6e-36 156.8 153 59.5
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.6e-36 156.8 155 55.5
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 2.1e-36 156.4 155 56.8
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 2.7e-36 156.0 155 58.1
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 2.7e-36 156.0 155 56.8
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 3.5e-36 155.6 155 56.1
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.5e-36 155.6 157 58.0
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.5e-36 155.6 157 58.0
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 3.5e-36 155.6 156 59.0
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.6e-36 155.2 157 58.6
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 4.6e-36 155.2 156 59.0
Hma1.2p1_0341F.1_g130260 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 4.6e-36 155.2 155 56.1
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 6.0e-36 154.8 124 64.5
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 7.9e-36 154.5 155 54.8
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 7.9e-36 154.5 152 56.6
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 7.9e-36 154.5 157 56.1
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 7.9e-36 154.5 156 57.7
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 7.9e-36 154.5 155 56.8
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.0e-35 154.1 155 58.1
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 1.0e-35 154.1 157 57.3
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.3e-35 153.7 155 56.8
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 1.7e-35 153.3 155 56.8
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.7e-35 153.3 155 58.1
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.7e-35 153.3 155 58.1
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.7e-35 153.3 156 58.3
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 2.3e-35 152.9 155 55.5
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 2.3e-35 152.9 153 54.9
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 3.0e-35 152.5 155 57.4
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 3.9e-35 152.1 155 56.8
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 3.9e-35 152.1 152 57.2
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 5.1e-35 151.8 155 54.2
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 6.6e-35 151.4 155 57.4
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 6.6e-35 151.4 152 57.2
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 8.7e-35 151.0 158 53.2
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 8.7e-35 151.0 155 56.8
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 8.7e-35 151.0 162 58.0
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 1.5e-34 150.2 152 55.9
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.5e-34 150.2 155 55.5
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 1.9e-34 149.8 152 55.9
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 2.5e-34 149.4 155 56.1
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 2.5e-34 149.4 152 57.9
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 3.3e-34 149.1 155 55.5
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 3.3e-34 149.1 155 56.8
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 5.6e-34 148.3 155 53.5
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 7.3e-34 147.9 152 56.6
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 7.3e-34 147.9 155 54.2
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 9.6e-34 147.5 145 55.9
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 1.6e-33 146.7 155 55.5
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 1.6e-33 146.7 161 53.4
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 2.1e-33 146.4 155 55.5
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 1.1e-32 144.1 155 54.8
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 1.4e-32 143.7 155 53.5
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 1.8e-32 143.3 153 56.2
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 2.4e-32 142.9 155 52.3
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 3.1e-32 142.5 160 53.1
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 4.0e-32 142.1 152 54.6
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 4.0e-32 142.1 155 53.5
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 4.0e-32 142.1 152 54.6
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 9.0e-32 141.0 181 49.2
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 1.5e-31 140.2 153 54.2
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 1.5e-31 140.2 156 53.2
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 1.5e-31 140.2 152 53.9
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 3.4e-31 139.0 152 52.0
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 4.5e-31 138.7 145 55.2
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 9.9e-31 137.5 156 53.2
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 2.2e-30 136.3 152 53.3
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 2.2e-30 136.3 153 52.3
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 1.9e-29 133.3 153 53.6
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 1.2e-28 130.6 163 49.1
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.2e-28 130.6 155 49.7
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 2.1e-28 129.8 155 50.3
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 4.6e-28 128.6 152 48.7
C08p54070 Brassica napus HOM05D001670 ORTHO05D002980 1.3e-27 127.1 160 46.2
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 1.3e-27 127.1 160 46.2
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 1.3e-27 127.1 160 46.9
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 1.3e-27 127.1 156 47.4
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 1.8e-27 126.7 157 49.0
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 1.8e-27 126.7 154 48.7
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 3.0e-27 125.9 159 46.5
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 3.0e-27 125.9 155 48.4
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 3.9e-27 125.6 157 46.5
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 5.1e-27 125.2 145 49.0
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 5.1e-27 125.2 145 49.0
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 6.7e-27 124.8 151 49.0
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 8.7e-27 124.4 145 49.0
Thecc.03G154100 Theobroma cacao HOM05D001670 ORTHO05D002980 8.7e-27 124.4 137 53.3
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 1.1e-26 124.0 156 47.4
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 1.5e-26 123.6 156 46.2
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 1.5e-26 123.6 145 48.3
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 1.5e-26 123.6 145 48.3
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.9e-26 123.2 159 47.8
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 3.3e-26 122.5 145 48.3
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 5.6e-26 121.7 149 47.0
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 9.6e-26 120.9 144 47.9
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 9.6e-26 120.9 153 45.8
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 2.1e-25 119.8 145 47.6
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 2.8e-25 119.4 120 55.0
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 3.7e-25 119.0 145 48.3
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 4.8e-25 118.6 106 57.5
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 4.8e-25 118.6 106 57.5
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 4.8e-25 118.6 106 57.5
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 4.8e-25 118.6 125 55.2
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 6.2e-25 118.2 152 43.4
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 1.1e-24 117.5 106 56.6
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 1.1e-24 117.5 106 56.6
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.4e-24 117.1 156 44.9
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 4.5e-23 112.1 120 50.0
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 1.0e-22 110.9 182 41.8
MELO3C013604.2 Cucumis melo HOM05D001670 ORTHO05D015222 1.1e-21 107.5 110 57.3
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 3.9e-19 99.0 120 46.7
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 8.7e-19 97.8 78 65.4
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 3.3e-18 95.9 132 47.7
arahy.Tifrunner.gnm1.ann1.A8401K Arachis hypogaea HOM05D001670 ORTHO05D015222 6.2e-17 91.7 152 38.2
Psat0s3411g0160 Pisum sativum HOM05D001670 ORTHO05D015222 1.1e-16 90.9 118 50.8
Cpa.g.sc587.1 Carica papaya HOM05D001670 ORTHO05D002980 5.8e-15 85.1 114 50.9
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 2.2e-14 83.2 85 50.6
Lj5A710T19 Lonicera japonica HOM05D001670 ORTHO05D015222 2.5e-13 79.7 124 45.2
BcaNung05010 Brassica carinata HOM05D001670 ORTHO05D010670 3.2e-13 79.3 128 40.6
arahy.Tifrunner.gnm1.ann1.NUD6QU Arachis hypogaea HOM05D001670 ORTHO05D015222 1.2e-12 77.4 68 60.3
Actinidia20642 Actinidia chinensis HOM05D001670 ORTHO05D015222 1.1e-10 70.9 103 48.5
PSO782G0711 Papaver somniferum HOM05D001670 ORTHO05D015222 2.5e-10 69.7 152 34.2
Aqoxy1G02767 Aquilegia oxysepala HOM05D007748 ORTHO05D009345 2.8e-09 66.2 81 50.6
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 1.8e-08 63.5 99 37.4
Actinidia00128 Actinidia chinensis HOM05D001670 ORTHO05D015222 7.7e-07 58.2 54 64.8
Actinidia12671 Actinidia chinensis HOM05D001670 ORTHO05D015222 7.7e-07 58.2 81 44.4


User provided reference genes

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