Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.2e-245 852.8 446 100.0
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.9e-240 835.5 446 98.2
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 9.9e-237 823.2 454 96.0
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 4.9e-220 767.7 454 87.4
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.4e-214 748.8 454 87.4
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 6.9e-214 747.3 454 85.9
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 5.8e-213 744.2 460 85.4
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 2.3e-201 705.7 490 78.0
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 4.7e-194 681.4 453 79.7
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 6.1e-194 681.0 445 79.6
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.4e-193 679.9 453 79.7
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 8.8e-193 677.2 451 80.0
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 8.8e-193 677.2 452 78.8
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 4.4e-192 674.9 453 77.9
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 6.3e-191 671.0 451 79.2
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 6.3e-191 671.0 452 79.0
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.8e-190 669.5 456 77.4
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 5.3e-190 667.9 456 77.2
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.5e-189 666.4 454 76.7
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.0e-189 666.0 453 77.9
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 5.9e-189 664.5 449 78.8
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.0e-188 663.7 452 76.5
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 1.3e-188 663.3 466 75.1
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 1.7e-188 662.9 459 77.6
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 2.2e-188 662.5 452 77.0
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 5.2e-185 651.4 455 75.8
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 2.0e-184 649.4 446 75.8
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.3e-184 648.7 451 76.7
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 9.7e-184 647.1 445 77.8
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 1.3e-183 646.7 455 76.7
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 1.3e-183 646.7 455 75.4
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 2.2e-183 646.0 451 75.2
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.4e-182 643.3 454 74.7
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 4.1e-182 641.7 444 77.0
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 2.0e-181 639.4 444 76.6
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 4.5e-181 638.3 459 75.4
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 8.5e-180 634.0 453 77.3
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 8.5e-180 634.0 444 74.8
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.9e-179 632.9 446 74.4
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.9e-179 632.9 451 74.5
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 4.2e-179 631.7 446 76.0
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 6.1e-178 627.9 455 74.3
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 4.4e-176 621.7 446 73.5
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 4.4e-176 621.7 452 72.6
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.7e-175 619.8 446 74.2
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 2.2e-175 619.4 454 72.0
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 2.8e-175 619.0 450 72.7
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 1.4e-174 616.7 444 73.2
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 3.1e-174 615.5 445 73.7
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 5.3e-174 614.8 453 71.3
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 1.2e-173 613.6 454 73.1
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 2.0e-173 612.8 453 74.0
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 2.7e-173 612.5 430 76.5
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 3.5e-173 612.1 454 72.5
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 4.5e-173 611.7 452 73.7
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.3e-172 610.1 444 74.1
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 6.5e-172 607.8 459 72.1
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 8.5e-172 607.4 419 76.6
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 8.5e-172 607.4 456 71.3
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 8.5e-172 607.4 449 74.2
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.9e-171 606.3 409 77.0
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 2.5e-171 605.9 426 74.6
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 3.2e-171 605.5 444 73.6
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 5.5e-171 604.7 452 73.7
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 3.6e-170 602.1 458 69.2
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 4.7e-170 601.7 445 73.3
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 8.0e-170 600.9 446 71.5
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.4e-169 600.1 444 70.7
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 8.8e-169 597.4 446 71.5
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.2e-168 597.0 496 67.5
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.5e-168 596.7 394 78.2
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 9.8e-168 594.0 444 70.0
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 9.8e-168 594.0 452 70.6
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.7e-167 593.2 452 71.2
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 2.8e-167 592.4 444 72.5
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 8.3e-167 590.9 444 72.3
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.1e-166 590.5 412 74.5
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 3.1e-166 589.0 444 70.3
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 5.4e-166 588.2 444 70.0
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 7.0e-166 587.8 444 69.1
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 7.0e-166 587.8 453 69.1
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 3.5e-165 585.5 456 71.7
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 3.5e-165 585.5 449 68.6
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 4.5e-165 585.1 444 69.1
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.5e-165 585.1 475 68.2
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 1.3e-164 583.6 453 70.9
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 5.0e-164 581.6 444 68.5
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 5.0e-164 581.6 444 68.7
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 6.6e-164 581.3 444 68.9
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 8.6e-164 580.9 459 70.6
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-163 580.5 444 68.5
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 3.3e-163 578.9 447 69.1
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 9.5e-163 577.4 446 70.0
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.6e-162 576.6 450 67.3
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 6.1e-162 574.7 452 68.1
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 1.2e-160 570.5 453 66.9
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 7.5e-160 567.8 461 70.7
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 4.9e-159 565.1 474 63.9
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 6.3e-159 564.7 456 66.2
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 8.3e-159 564.3 447 67.1
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.8e-158 563.1 444 67.6
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.1e-158 562.4 454 68.5
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 7.0e-158 561.2 448 67.4
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 1.6e-157 560.1 448 67.2
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 5.9e-157 558.1 452 67.9
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.7e-156 556.6 453 68.0
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 1.6e-154 550.1 473 63.4
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 1.0e-153 547.4 444 66.4
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 1.0e-153 547.4 452 65.5
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 9.8e-152 540.8 453 64.7
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 1.6e-149 533.5 457 64.6
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.6e-141 506.9 369 72.4
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.3e-140 503.8 415 67.0
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 6.6e-140 501.5 415 65.5
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 7.3e-139 498.0 394 66.5
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 2.3e-137 493.0 428 64.5
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.5e-136 490.3 428 64.0
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 8.6e-132 474.6 479 59.1
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 8.1e-130 468.0 508 54.5
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 8.9e-129 464.5 391 63.4
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 4.2e-126 455.7 344 70.1
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 3.5e-125 452.6 453 60.0
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 1.3e-124 450.7 425 60.2
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 2.5e-123 446.4 471 53.9
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 9.0e-121 438.0 343 67.9
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 9.0e-113 411.4 475 49.7
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 7.6e-112 408.3 505 46.9
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 9.3e-110 401.4 446 52.2
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 4.6e-109 399.1 480 52.9
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.0e-105 386.0 491 46.2
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 2.0e-104 383.6 466 50.9
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 1.7e-95 354.0 242 72.7
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 7.1e-94 348.6 396 51.8
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 1.1e-89 334.7 345 54.8
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 3.1e-81 306.6 488 40.8
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 1.1e-78 298.1 371 50.9
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 3.2e-78 296.6 517 40.0
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 2.0e-72 277.3 382 44.5
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 8.0e-61 238.8 246 58.5
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 3.4e-59 233.4 174 67.8
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 6.3e-58 229.2 261 54.8
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 1.1e-57 228.4 128 85.2
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 3.1e-57 226.9 178 63.5
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 1.6e-56 224.6 375 40.5
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 1.0e-55 221.9 179 63.1
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 4.7e-53 213.0 172 63.4
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.3e-52 210.7 231 54.5
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.9e-46 191.0 394 36.8
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.8e-44 184.5 270 41.9
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 8.0e-37 159.1 195 56.4
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 2.6e-35 154.1 352 32.7
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.6e-32 144.8 141 53.2
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 4.6e-32 143.3 142 59.9
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 1.1e-30 138.7 109 60.6
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 2.8e-29 134.0 146 60.3
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 1.1e-28 132.1 160 53.8
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 5.8e-27 126.3 172 46.5
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 4.9e-26 123.2 116 56.0
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.1e-25 122.1 167 52.1
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.8e-20 104.8 83 74.7
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 9.2e-17 92.4 302 27.2
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 1.2e-16 92.0 57 73.7
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 1.6e-16 91.7 99 47.5
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 2.3e-15 87.8 200 34.0
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 4.3e-14 83.6 54 72.2
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 2.9e-10 70.9 128 44.5
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.9e-09 68.2 109 36.7
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.2e-08 65.5 46 73.9
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 2.7e-08 64.3 42 81.0
Actinidia22797 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.7e-07 61.6 107 43.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.3e-07 61.2 32 93.8
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 2.3e-07 61.2 35 85.7
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 5.1e-07 60.1 40 72.5


User provided reference genes

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