Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 3.3e-128 461.8 255 100.0
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.8e-95 352.4 262 72.9
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 4.1e-94 348.6 259 71.4
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.9e-93 344.7 265 70.9
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.7e-92 343.2 263 70.7
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 2.7e-90 335.9 184 88.6
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 3.6e-90 335.5 255 69.0
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.7e-90 335.1 181 89.5
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 1.0e-89 334.0 252 71.4
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.4e-89 333.6 184 87.5
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.4e-89 333.6 247 74.5
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.3e-89 332.8 254 71.7
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.3e-89 332.8 254 71.7
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 4.0e-89 332.0 259 70.7
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 5.2e-89 331.6 179 89.9
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 6.8e-89 331.3 254 71.3
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 8.8e-89 330.9 181 87.3
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 8.8e-89 330.9 259 69.9
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 8.8e-89 330.9 180 88.9
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.2e-88 330.5 257 68.9
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 2.0e-88 329.7 248 68.5
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 2.6e-88 329.3 184 88.6
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 4.4e-88 328.6 238 72.3
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 5.7e-88 328.2 231 74.0
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 7.5e-88 327.8 244 71.7
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 1.3e-87 327.0 259 69.5
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.3e-87 327.0 182 85.7
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 2.2e-87 326.2 182 87.9
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.7e-87 325.5 183 86.3
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 3.7e-87 325.5 245 70.2
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 4.8e-87 325.1 255 67.8
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.8e-87 325.1 180 87.8
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 6.3e-87 324.7 244 69.3
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 6.3e-87 324.7 253 72.3
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 6.3e-87 324.7 184 85.9
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 6.3e-87 324.7 260 67.3
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 1.8e-86 323.2 178 88.2
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.8e-86 323.2 180 85.6
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.4e-86 322.8 181 85.1
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 2.4e-86 322.8 181 84.0
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 3.1e-86 322.4 243 68.7
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 4.1e-86 322.0 251 69.3
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 4.1e-86 322.0 243 69.1
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 4.1e-86 322.0 182 84.6
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 5.3e-86 321.6 244 68.9
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 7.0e-86 321.2 261 65.9
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 7.0e-86 321.2 244 68.9
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.0e-86 321.2 180 86.1
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 7.0e-86 321.2 181 84.5
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 7.0e-86 321.2 183 84.7
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.2e-85 320.5 254 68.1
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.2e-85 320.5 258 67.1
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.2e-85 320.5 185 83.2
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.6e-85 320.1 176 86.9
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 1.6e-85 320.1 184 87.0
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.6e-85 320.1 253 68.8
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.6e-85 320.1 181 83.4
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.6e-85 320.1 181 84.0
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 2.0e-85 319.7 185 85.4
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.0e-85 319.7 253 68.4
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 2.0e-85 319.7 181 83.4
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 3.5e-85 318.9 253 67.6
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 4.5e-85 318.5 180 83.3
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 5.9e-85 318.2 255 66.3
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 5.9e-85 318.2 178 86.0
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.9e-85 318.2 180 86.7
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 5.9e-85 318.2 237 70.9
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 7.7e-85 317.8 183 83.6
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.0e-84 317.4 256 68.0
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.3e-84 317.0 179 85.5
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 2.2e-84 316.2 179 84.9
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 2.9e-84 315.8 184 82.6
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.9e-84 315.8 256 67.6
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 3.8e-84 315.5 183 82.5
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 3.8e-84 315.5 183 82.5
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 3.8e-84 315.5 182 81.3
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 3.8e-84 315.5 183 83.6
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 5.0e-84 315.1 183 82.5
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 5.0e-84 315.1 184 82.1
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 8.5e-84 314.3 179 82.7
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.1e-83 313.9 184 81.5
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.5e-83 313.5 184 81.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.9e-83 313.2 249 68.3
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.2e-83 312.4 180 82.2
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 4.2e-83 312.0 252 65.1
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 5.5e-83 311.6 184 81.0
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 7.2e-83 311.2 184 81.0
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 7.2e-83 311.2 182 83.5
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.2e-82 310.5 184 80.4
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 2.7e-82 309.3 181 81.8
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.0e-81 307.4 257 62.3
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 2.3e-81 306.2 257 62.3
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 6.8e-81 304.7 185 78.9
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 8.8e-81 304.3 244 66.4
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 3.4e-80 302.4 257 62.3
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.7e-79 300.1 242 64.5
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.8e-79 299.3 183 78.7
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 3.7e-79 298.9 165 86.7
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.4e-78 297.0 173 86.1
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.0e-76 290.8 259 62.2
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.8e-76 288.9 181 76.8
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 3.8e-76 288.9 184 75.5
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 5.0e-76 288.5 159 84.9
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.9e-75 286.6 178 78.1
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 1.2e-74 283.9 180 79.4
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 1.6e-74 283.5 184 73.9
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.8e-74 282.7 184 75.0
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.6e-74 282.3 181 76.2
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 4.7e-74 282.0 184 73.9
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 8.0e-74 281.2 167 79.0
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 3.4e-72 275.8 182 74.2
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 5.7e-72 275.0 178 77.0
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 9.8e-72 274.2 143 92.3
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 6.3e-71 271.6 183 72.7
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.4e-70 270.4 181 72.4
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.4e-70 270.4 181 72.4
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.4e-70 270.4 183 72.1
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.8e-70 270.0 181 73.5
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 2.4e-70 269.6 177 73.4
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 4.1e-70 268.9 183 71.6
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 5.4e-70 268.5 181 76.2
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 9.2e-70 267.7 177 72.3
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.6e-69 266.9 240 57.9
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.6e-69 266.9 181 71.8
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.5e-69 265.4 211 66.4
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-68 263.5 181 70.2
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.3e-68 263.1 183 70.5
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.3e-68 263.1 183 70.5
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.3e-68 263.1 178 70.2
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 3.9e-68 262.3 246 57.3
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 3.9e-68 262.3 246 57.3
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 7.3e-67 258.1 179 68.7
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 7.3e-67 258.1 178 68.5
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 2.1e-66 256.5 181 69.1
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 5.2e-65 251.9 150 80.0
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.4e-63 245.0 180 71.1
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.4e-62 243.8 174 66.7
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 3.6e-58 229.2 121 90.9
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 6.2e-58 228.4 202 66.3
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 8.1e-58 228.0 131 80.9
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 3.7e-55 219.2 150 68.7
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.6e-53 213.8 205 60.5
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 2.3e-52 209.9 184 63.6
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-51 207.6 122 85.2
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 4.3e-51 205.7 189 61.4
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 7.3e-51 204.9 151 64.9
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 4.0e-49 199.1 184 62.5
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.4e-48 195.7 216 49.5
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.6e-45 187.2 156 66.0
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 3.5e-45 186.0 163 60.1
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 6.0e-45 185.3 182 58.2
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.6e-42 177.2 102 83.3
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.5e-40 170.6 126 69.0
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 9.6e-35 151.4 169 53.8
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 5.4e-30 135.6 76 84.2
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 2.7e-29 133.3 80 80.0
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 4.6e-29 132.5 79 78.5
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 1.3e-28 131.0 103 63.1
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.2e-26 122.1 112 57.1
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 5.3e-25 119.0 67 82.1
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 8.4e-23 111.7 88 67.0
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.9e-22 110.5 125 51.2
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.5e-14 83.6 50 84.0
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 3.2e-14 83.2 217 33.6
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 9.3e-14 81.6 203 35.0
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 5.7e-11 72.4 154 30.5
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 3.7e-10 69.7 134 35.1
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 6.3e-10 68.9 138 33.3
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.8e-09 67.4 54 61.1
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 3.4e-08 63.2 63 46.0
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 7.6e-08 62.0 54 53.7
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 1.1e-06 58.2 97 39.2
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 3.2e-06 56.6 131 32.8
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 4.2e-06 56.2 60 48.3
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 5.5e-06 55.8 52 57.7


User provided reference genes

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