Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046413 Camellia sinensis var. sinensis HOM05D049805 ORTHO05D043320 2.5e-86 322.0 158 100.0
CSS0002052 Camellia sinensis var. sinensis HOM05D049805 ORTHO05D043320 2.2e-66 255.8 135 95.6
TAR636G0479 Trochodendron aralioides HOM05D002702 ORTHO05D003416 2.7e-11 72.8 104 43.3
MBI17_g29780_MAGBIO Magnolia biondii HOM05D002702 ORTHO05D003416 1.7e-10 70.1 91 47.3
ClCG03G016660 Citrullus lanatus HOM05D002702 ORTHO05D003416 5.1e-10 68.6 90 46.7
Nn7g37357 Nelumbo nucifera HOM05D002702 ORTHO05D003416 6.6e-10 68.2 99 44.4
Lj2g0010098 Lotus japonicus HOM05D002702 ORTHO05D003416 3.3e-09 65.9 92 44.6
PGR042G0279 Punica granatum HOM05D002702 ORTHO05D003416 3.3e-09 65.9 95 44.2
Actinidia07964 Actinidia chinensis HOM05D002702 ORTHO05D003416 4.3e-09 65.5 71 53.5
PGR031G3358 Punica granatum HOM05D002702 ORTHO05D003416 5.6e-09 65.1 89 44.9
Dinv25037 Davidia involucrata HOM05D002702 ORTHO05D003416 7.3e-09 64.7 58 58.6
Cpa.g.c27574 Carica papaya HOM05D002702 ORTHO05D003416 1.2e-08 63.9 83 45.8
CDE10G0041 Ceratophyllum demersum HOM05D002702 ORTHO05D003416 1.2e-08 63.9 95 42.1
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 1.6e-08 63.5 94 40.4
Lj4g0005434 Lotus japonicus HOM05D002702 ORTHO05D003416 2.8e-08 62.8 76 46.1
PSO170G0409 Papaver somniferum HOM05D002702 ORTHO05D003416 2.8e-08 62.8 99 43.4
Atru.chr2.1532 Acer truncatum HOM05D002702 ORTHO05D003416 3.6e-08 62.4 73 49.3
Eucgr.A02144 Eucalyptus grandis HOM05D002702 ORTHO05D003416 3.6e-08 62.4 40 70.0
MELO3C015360.2 Cucumis melo HOM05D002702 ORTHO05D003416 6.2e-08 61.6 67 50.7
CsaV3_1G039340 Cucumis sativus L. HOM05D002702 ORTHO05D003416 6.2e-08 61.6 99 43.4
Sc25g0001160 Simmondsia chinensis HOM05D002702 ORTHO05D003416 6.2e-08 61.6 38 73.7
Dinv17311 Davidia involucrata HOM05D002702 ORTHO05D003416 8.1e-08 61.2 121 34.7
PSO832G1528 Papaver somniferum HOM05D002702 ORTHO05D003416 8.1e-08 61.2 69 47.8
PSO210G0347 Papaver somniferum HOM05D002702 ORTHO05D003416 1.1e-07 60.8 98 38.8
Solyc01g088720.3 Solanum lycopersicum HOM05D002702 ORTHO05D003416 2.3e-07 59.7 71 50.7
Sopen01g035560 Solanum pennellii HOM05D002702 ORTHO05D003416 2.3e-07 59.7 71 50.7
Cc02_g13440 Coffea canephora HOM05D002702 ORTHO05D003416 4.0e-07 58.9 56 51.8
Duzib128G1433 Durio zibethinus HOM05D002702 ORTHO05D003416 5.2e-07 58.5 38 68.4
Potri.009G039100 Populus trichocarpa HOM05D002702 ORTHO05D003416 8.9e-07 57.8 71 46.5
CAN.G756.30 Capsicum annuum HOM05D002702 ORTHO05D003416 1.2e-06 57.4 63 49.2
Ciclev10019321m.g Citrus clementina HOM05D002702 ORTHO05D003416 1.2e-06 57.4 69 47.8
TWI60G0137 Tripterygium wilfordii HOM05D002702 ORTHO05D003416 1.2e-06 57.4 38 68.4
GSVIVG01029946001 Vitis vinifera HOM05D002702 ORTHO05D003416 1.2e-06 57.4 38 71.1
Manes.08G152300 Manihot esculenta HOM05D002702 ORTHO05D003416 2.0e-06 56.6 73 46.6
Sabra16G0149300 Salix brachista HOM05D002702 ORTHO05D003416 2.0e-06 56.6 59 50.8
Haze_20120 Corylus avellana HOM05D002702 ORTHO05D003416 2.6e-06 56.2 38 68.4
Gohir.D11G170800 Gossypium hirsutum HOM05D002702 ORTHO05D003416 2.6e-06 56.2 70 42.9
Gorai.007G182800 Gossypium raimondii HOM05D002702 ORTHO05D003416 2.6e-06 56.2 70 42.9
Potri.001G082800 Populus trichocarpa HOM05D011191 ORTHO05D010786 2.6e-06 56.2 102 36.3
Sc13g0009820 Simmondsia chinensis HOM05D002702 ORTHO05D019466 2.6e-06 56.2 64 50.0
Zm00001eb342490 Zea mays HOM05D002702 ORTHO05D003416 2.6e-06 56.2 37 70.3
CiPaw.08G118400 Carya illinoinensis HOM05D002702 ORTHO05D003416 3.4e-06 55.8 66 45.5
COL.COLO4_20084 Corchorus olitorius HOM05D002702 ORTHO05D003416 3.4e-06 55.8 38 65.8
Haze_06436 Corylus avellana HOM05D002702 ORTHO05D003416 3.4e-06 55.8 96 38.5
Peaxi162Scf00978g00036 Petunia axillaris HOM05D002702 ORTHO05D003416 3.4e-06 55.8 64 48.4
HPP92_004334 Vanilla planifolia HOM05D002702 ORTHO05D003416 3.4e-06 55.8 37 67.6
Migut.K00214 Erythranthe guttata HOM05D002702 ORTHO05D003416 4.4e-06 55.5 64 46.9
Lalb_Chr02g0157411 Lupinus albus HOM05D002702 ORTHO05D003416 4.4e-06 55.5 38 65.8
Nitab4.5_0012106g0010 Nicotiana tabacum HOM05D011191 ORTHO05D010786 4.4e-06 55.5 44 59.1
Rhsim05G0035300 Rhododendron simsii HOM05D002702 ORTHO05D003416 4.4e-06 55.5 92 34.8
Hund20999 Selenicereus undatus HOM05D022334 ORTHO05D019466 4.4e-06 55.5 37 67.6
THA.LOC104816256 Tarenaya hassleriana HOM05D002702 ORTHO05D003416 4.4e-06 55.5 38 65.8
Migut.A00390 Erythranthe guttata HOM05D011191 ORTHO05D010786 5.8e-06 55.1 118 36.4
Gohir.A11G164500 Gossypium hirsutum HOM05D002702 ORTHO05D003416 5.8e-06 55.1 79 38.0
Nitab4.5_0000406g0150 Nicotiana tabacum HOM05D011191 ORTHO05D010786 5.8e-06 55.1 44 59.1
Zm00001eb294450 Zea mays HOM05D002702 ORTHO05D003416 5.8e-06 55.1 37 67.6
MSTRG.11791 Avicennia marina HOM05D011191 ORTHO05D010786 7.6e-06 54.7 113 36.3
DCAR_013573 Daucus carota HOM05D002702 ORTHO05D003416 7.6e-06 54.7 69 46.4
Os05g0305100 Oryza sativa ssp. japonica HOM05D002702 ORTHO05D003416 7.6e-06 54.7 35 71.4
Potri.001G246100 Populus trichocarpa HOM05D002702 ORTHO05D003416 7.6e-06 54.7 52 53.8
Thecc.05G241000 Theobroma cacao HOM05D002702 ORTHO05D003416 7.6e-06 54.7 38 63.2
Zm00001eb190030 Zea mays HOM05D002702 ORTHO05D003416 7.6e-06 54.7 96 35.4
Zm00001eb294470 Zea mays HOM05D002702 ORTHO05D003416 7.6e-06 54.7 96 35.4
Aqoxy5G01199 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 9.9e-06 54.3 101 34.7
Lsat_1_v5_gn_1_126300 Lactuca sativa HOM05D002702 ORTHO05D003416 9.9e-06 54.3 64 48.4


User provided reference genes

Program Settings